| Literature DB >> 18446208 |
Charlotte Gustafsson1, Jenny Mjösberg, Andreas Matussek, Robert Geffers, Leif Matthiesen, Göran Berg, Surendra Sharma, Jan Buer, Jan Ernerudh.
Abstract
BACKGROUND: Although uterine macrophages are thought to play an important regulatory role at the maternal-fetal interface, their global gene expression profile is not known. METHODOLOGY/PRINCIPALEntities:
Mesh:
Substances:
Year: 2008 PMID: 18446208 PMCID: PMC2323105 DOI: 10.1371/journal.pone.0002078
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Methods performed on the different subjects
| Subject | FACSAria sorting | MACS sorting | Micro-array | Real-time PCR | Protein detection | Flow cytometry |
| 1 | X | X | X | |||
| 2 | X | X | X | |||
| 3 | X | X | X | |||
| 4 | X | X | X | |||
| 5 | X | X | X | |||
| 6 | X | X | X | |||
| 7 | X | X | X | X | ||
| 8 | X | X | X | X | ||
| 9 | X | X | X | |||
| 10 | X | X | X | |||
| 11 | X | X |
Flow cytometry for control of purity
Primers used for real-time RT-PCR
| Product | 5′ Sequence 3′ | Funktion | Product length | Tm |
| IDO |
| sense | 121 bp | 59,9 °C |
|
| antisense | 59,9 °C | ||
| TREM-2 |
| sense | 122 bp | 57,3 °C |
|
| antisense | 59,5 °C | ||
| CD 209 |
| sense | 86 bp | 59,9 °C |
|
| antisense | 59,9 °C | ||
| ICAM-3 |
| sense | 90 bp | 59,9 °C |
|
| antisense | 59,9 °C | ||
| NRP-1 |
| sense | 103 bp | 59,9 °C |
|
| antisense | 59,9 °C | ||
| RPS-9 |
| sense | 83 bp | 59,6 °C |
|
| antisense | 60,0 °C |
Tm: melting temperature
Selection of genes differentially expressed in decidual compared to blood CD14+ cells in early pregnancy.
| Gene name | Gene bank accession number | Fold change | ||||
|
| ||||||
| Suppressive/Anti-inflammatory functions | ||||||
|
| ||||||
| Alpha-2-macroglobulin; A2M | NM_000014 | 92 | ||||
| V-set and immunoglobulin domain containing 4;VSIG4 | NM_007268 | 23 | ||||
| Prostaglandin D2 synthase, hematopoietic; PGDS | NM_014485 | 13 | ||||
| Chemokine (C-C motif) ligand 18;CCL18, AMAC1 | Y13710 | 3.8 | ||||
|
| ||||||
| Mannose receptor, C type 1;MRC1 | NM_002438 | 36 | ||||
| CD209 antigen; DC-SIGN | AF290886 | 16 | ||||
| Triggering receptor expressed on myeloid cells 2;TREM2 | NM_018965 | 9.0 | ||||
| Tumor necrosis factor receptor superfamily, member 21; TNFRSF21 | NM_016629 | 7.3 | ||||
| CD9 antigen (p24); CD9 | NM_001769 | 5.3 | ||||
| Dipeptidase 2;DPEP2 | NM_022355 | −2.8 | ||||
| C-type lectin domain family 4, member A;CLEC4A (LLIR) | AF200738 | −3.0 | ||||
|
| ||||||
| Disabled homolog 2, mitogen-responsive phosphoprotein (Drosophila); DAB2 | AF188298 | 30 | ||||
| V-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian); MAF | NM_005360 | 12 | ||||
| Interleukin-1 receptor-associated kinase 3;IRAK3 | NM_007199 | −2.7 | ||||
| Activating/Pro-inflammatory functions | ||||||
|
| ||||||
| Secreted phosphoprotein; SPP1 | M83248 | 101 | ||||
| Complement component 3;C3 | NM_000064 | 48 | ||||
| Chemokine (C motif) ligand 2; XCL2 | U23772 | 7.6 | ||||
| Chemokine (C-C motif) ligand 2; CCL2, MCP1 | S69738 | 5.8 | ||||
| Chemokine (C motif) ligand 1; XCL1 (lymphotactin) | NM_003175 | 5.7 | ||||
| Chemokine (C-C motif) ligand 8;CCL8, MCP2 | AI984980 | 5.0 | ||||
| Proteolipid protein 2 (colonic epithelium-enriched);PLP2 | NM_002668 | −4.0 | ||||
| S100 calcium binding protein A8 (calgranulin A);S100A8 | NM_002964 | −5.8 | ||||
| Properdin P factor, complement;PFC | NM_002621 | −6.6 | ||||
|
| ||||||
| SLAM family member 8;SLAMF8 | NM_020125 | 4.7 | ||||
| Bone marrow stromal cell antigen 1;BST1 (CD157) | NM_004334 | −3.1 | ||||
| Asialoglycoprotein receptor 2;ASGR2, CLEC4H2 | NM_001181 | −4.1 | ||||
| Intercellular adhesion molecule 3;ICAM3 | NM_002162 | −4.8 | ||||
| EGF-like-domain, multiple 5;EGFL5 | W68084 | −5.9 | ||||
| Selectin L (lymphocyte adhesion molecule 1);SELL | NM_000655 | −7.0 | ||||
| Vanin 2;VNN2 | NM_004665 | −7.5 | ||||
|
| ||||||
| Fibronectin 1;FN1 | AF130095 | 68 | ||||
| Complement component 1, q subcomponent, beta polypeptide;C1QB | NM_000491 | 58 | ||||
| Collagen, type III, alpha 1;COL3A1 | AU144167 | 27 | ||||
| Heat shock 27kDa protein 1; HSPB1 | NM_001540 | 21 | ||||
| Complement component 1, q subcomponent, alpha polypeptide;C1QA | NM_015991 | 16 | ||||
| Endothelial PAS domain protein 1;EPAS1 | AF052094 | 15 | ||||
| Growth arrest-specific 6;GAS6 | L13720 | 11 | ||||
| Collagen, type I, alpha 2;COL1A2 | AA788711 | 10 | ||||
| Collagen, type VI, alpha 3;COL6A3 | NM_004369 | 9.9 | ||||
| Collagen, type IV, alpha 2;COL4A2 | X05610 | 9.3 | ||||
| Serpin peptidase inhibitor, clade F, member 1;SERPINF1 | NM_002615 | 8.2 | ||||
| Nerve growth factor receptor (TNFRSF16) associated protein 1;NGFRAP1 | NM_014380 | 7.9 | ||||
| Matrix metalloproteinase 9;MMP9, plasminogen | NM_004994 | 6.5 | ||||
| Protein S (alpha);PROS1 | NM_000313 | 5.3 | ||||
| Insulin-like growth factor 1 (somatomedin C);IGF1 | AI972496 | 5.1 | ||||
| Syndecan 2 (heparan sulfate proteoglycan 1);SDC2 | AL577322 | 4.4 | ||||
| Integrin, beta 5;ITGB5 | BE138575 | 3.7 | ||||
| S100 calcium binding protein A4 (calcium protein, calvasculin, metastasin, murine placental homolog);S100A4 | NM_002961 | −2.8 | ||||
| Chondroitin sulfate proteoglycan 2 (versican);CSPG2 | BF590263 | −3.2 | ||||
| Peptidyl arginine deiminase, type IV;PADI4 | NM_012387 | −5.9 | ||||
|
| ||||||
| Glycoprotein (transmembrane) nmb;GPNMB | NM_002510 | 54 | ||||
| Ribonucleotide reductase M2 polypeptide;RRM2 | BC001886 | 38 | ||||
| Thymidylate synthetase;TYMS | NM_001071 | 7.1 | ||||
| Ankyrin repeat domain 25;ANKRD25 | NM_015493 | 5.5 | ||||
| Deafness, autosomal dominant 5;DFNA5 | NM_004403 | 5.0 | ||||
| CDC20 cell division cycle 20 homolog (S. cerevisiae);CDC20 | NM_001255 | 4.6 | ||||
| KIAA0101 | NM_014736 | 3.8 | ||||
| Enolase superfamily member 1;ENOSF1 | NM_017512 | 3.7 | ||||
| Pituitary tumor-transforming 1;PTTG1 | NM_004219 | 3.4 | ||||
| MCM2 minichromosome maintenance deficient 2, mitotin (S. cerevisiae);MCM2 | NM_004526 | 3.2 | ||||
| Epithelial membrane protein 1;EMP1 | NM_001423 | 3.1 | ||||
| MCM6 minichromosome maintenance deficient 6 (MIS5 homolog, S. pombe) (S. cerevisiae);MCM6 | NM_005915 | 3.0 | ||||
| Hypothetical protein MAC30;MAC30 | BF038366 | 2.8 | ||||
| Sprouty homolog 2 (Drosophila);SPRY2 | NM_005842 | 2.8 | ||||
| Ribonuclease, RNase A family, 1 (pancreatic);RNASE1 | NM_002933 | 2.8 | ||||
| Stathmin 1/oncoprotein 18;STMN1 | NM_005563 | 2.7 | ||||
| Cyclin D3;CCND3 | NM_001760 | −2.9 | ||||
| Ras association (RalGDS/AF-6) domain family 2;RASSF2 | NM_014737 | −2.9 | ||||
| Chromosome 11 open reading frame 21;C11orf21 | NM_014144 | −3.0 | ||||
| Cytidine deaminase;CDA | NM_001785 | −4.4 | ||||
|
| ||||||
| Selenoprotein P, plasma, 1;SEPP1 | NM_005410 | 73 | ||||
| Apolipoprotein E;APOE | NM_000041 | 43 | ||||
| Phospholipid transfer protein;PLTP | NM_006227 | 30 | ||||
| Solute carrier organic anion transporter family, member 2B1;SLCO2B1 | NM_007256 | 21 | ||||
| Folate receptor 2 (fetal);FOLR2 | NM_000803 | 12 | ||||
| Phosphatidic acid phosphatase type 2B;PPAP2B | AA628586 | 11 | ||||
| Ectonucleotide pyrophosphatase/phosphodiesterase 2;ENPP2 | D45421 | 10 | ||||
| Phosphatidic acid phosphatase type 2A;PPAP2A | AF014403 | 7.5 | ||||
| Dehydrogenase/reductase (SDR family) member 3;DHRS3 | NM_004753 | 6.5 | ||||
| Solute carrier family 2 (facilitated glucose transporter), member 1;SLC2A1 | NM_006516 | 4.2 | ||||
| ATP-binding cassette, sub-family A (ABC1), member 1;ABCA1 | NM_005502 | 3.6 | ||||
| Chromosome 9 open reading frame 95/Nicotinamide riboside kinase;C9orf95, NRK1 | NM_017881 | 2.8 | ||||
| Hexokinase 3 (white cell);HK3 | NM_002115 | −2.7 | ||||
| Purinergic receptor P2X, ligand-gated ion channel, 1;P2RX1 | U45448 | −2.7 | ||||
| RAB11 family interacting protein 1 (class I);RAB11FIP1 | NM_025151 | −3.2 | ||||
| MOCO sulphurase C-terminal domain containing 1;MOSC1 | NM_022746 | −3.5 | ||||
| Solute carrier organic anion transporter family, member 3A1;SLCO3A1 | NM_013272 | −3.5 | ||||
| RAB27A, member RAS oncogene family;RAB27A | U38654 | −4.0 | ||||
| Selenoprotein X, 1;SEPX1 | NM_016332 | −4.0 | ||||
| Transketolase (Wernicke-Korsakoff syndrome);TKT | L12711 | −4.0 | ||||
Fold change is the factor of regulation of mRNA from CD14+ cells in decidua versus CD14+ cells in blood. Positive values denote up-regulation and negative values mean down-regulation. Genes included in this table were up- or down-regulated by a factor of at least 2 in all seven subjects.
Figure 1Cluster figure of the gene signature of 408 genes regulated in decidual compared to blood macrophages, showing all seven subjects (columns).
Requirements for regulation was 2-fold up-/down-regulation and a p-value <0.05 in the two subjects with highly pure cellpopulations (subjects 1 and 2).
Figure 2Mean results from three independent real-time PCR analyses for TREM2, CD209, ICAM3, IDO and NRP-1 showing fold change of mRNA expression in decidual compared to blood CD14 positive cells.
Figure 3Protein concentrations of a) CCL18 as measured with ELISA, b) CCL2 and c) MMP9 as measured by Luminex multiple bead technology in 24 hour culture supernatant of CD14 positive monocytes/macrophages isolated from 5 subjects.
Error bars show median values and p<0.01 for differences between decidual and blood CD14 positive cells for all proteins, using Wilcoxon signed ranked test.