Literature DB >> 18422341

High-throughput small angle X-ray scattering from proteins in solution using a microfluidic front-end.

K Nørgaard Toft1, Bente Vestergaard, Søren S Nielsen, Detlef Snakenborg, Mads G Jeppesen, Jes K Jacobsen, Lise Arleth, Jörg P Kutter.   

Abstract

This manuscript presents, for the first time, the method of automated structural analysis of biomolecules in solution on a microfluidic chip. A polymer-based micrototal analysis system for high-throughput Small-Angle X-ray Scattering (SAXS) data collection from biological macromolecules has been developed. The bioXTAS chip features an integrated X-ray transparent 200 nL sample chamber and diffusion-based mixing of protein and buffer solutions. Software for fully automated fluidic control, data acquisition, and data analysis has been developed. The proof-of concept is based on data using bovine serum albumin as the model system. It confirms the quality of SAXS data generated from small sample volumes and furthermore validates the on-chip mixing capabilities. SAXS data on the gradual unfolding of BSA induced by an anionic surfactant exemplifies how the bioXTAS chip can be used to follow and identify structural changes and proves the feasibility of high-throughput structural analysis in solution. In total, this shows that the bioXTAS chip has the potential for becoming a powerful tool for automated high-throughput structural analysis of macromolecular systems.

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Year:  2008        PMID: 18422341     DOI: 10.1021/ac800011y

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  21 in total

1.  High concentration formulation studies of an IgG2 antibody using small angle X-ray scattering.

Authors:  Charlotte Rode Mosbæk; Petr V Konarev; Dmitri I Svergun; Christian Rischel; Bente Vestergaard
Journal:  Pharm Res       Date:  2012-04-03       Impact factor: 4.200

2.  High-throughput biological small-angle X-ray scattering with a robotically loaded capillary cell.

Authors:  S S Nielsen; M Møller; R E Gillilan
Journal:  J Appl Crystallogr       Date:  2012-02-09       Impact factor: 3.304

Review 3.  Structural characterization of lipidic systems under nonequilibrium conditions.

Authors:  Anan Yaghmur; Michael Rappolt
Journal:  Eur Biophys J       Date:  2012-05-09       Impact factor: 1.733

4.  X-ray scattering experiments with high-flux X-ray source coupled rapid mixing microchannel device and their potential for high-flux neutron scattering investigations.

Authors:  R Jain; M Petri; S Kirschbaum; H Feindt; S Steltenkamp; S Sonnenkalb; S Becker; C Griesinger; A Menzel; T P Burg; S Techert
Journal:  Eur Phys J E Soft Matter       Date:  2013-09-27       Impact factor: 1.890

Review 5.  Experimental approaches for solution X-ray scattering and fiber diffraction.

Authors:  H Tsuruta; T C Irving
Journal:  Curr Opin Struct Biol       Date:  2008-09-29       Impact factor: 6.809

6.  Critical examination of the colloidal particle model of globular proteins.

Authors:  Prasad S Sarangapani; Steven D Hudson; Ronald L Jones; Jack F Douglas; Jai A Pathak
Journal:  Biophys J       Date:  2015-02-03       Impact factor: 4.033

7.  Accurate optimization of amino acid form factors for computing small-angle X-ray scattering intensity of atomistic protein structures.

Authors:  Dudu Tong; Sichun Yang; Lanyuan Lu
Journal:  J Appl Crystallogr       Date:  2016-06-20       Impact factor: 3.304

8.  Disentangling polydispersity in the PCNA-p15PAF complex, a disordered, transient and multivalent macromolecular assembly.

Authors:  Tiago N Cordeiro; Po-Chia Chen; Alfredo De Biasio; Nathalie Sibille; Francisco J Blanco; Jochen S Hub; Ramon Crehuet; Pau Bernadó
Journal:  Nucleic Acids Res       Date:  2017-02-17       Impact factor: 16.971

9.  Free-solution label-free detection of alpha-crystallin chaperone interactions by back-scattering interferometry.

Authors:  Joey C Latham; Richard A Stein; Darryl J Bornhop; Hassane S Mchaourab
Journal:  Anal Chem       Date:  2009-03-01       Impact factor: 6.986

10.  Calculation of accurate small angle X-ray scattering curves from coarse-grained protein models.

Authors:  Kasper Stovgaard; Christian Andreetta; Jesper Ferkinghoff-Borg; Thomas Hamelryck
Journal:  BMC Bioinformatics       Date:  2010-08-18       Impact factor: 3.169

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