Literature DB >> 24092048

X-ray scattering experiments with high-flux X-ray source coupled rapid mixing microchannel device and their potential for high-flux neutron scattering investigations.

R Jain1, M Petri, S Kirschbaum, H Feindt, S Steltenkamp, S Sonnenkalb, S Becker, C Griesinger, A Menzel, T P Burg, S Techert.   

Abstract

Small-angle X-ray scattering provides global, shape-sensitive structural information about macromolecules in solution. Its extension to time dimension in the form of time-resolved SAXS investigations and combination with other time-resolved biophysical methods contributes immensely to the study of protein dynamics. TR-SAXS can also provide unique information about the global structures of transient intermediates during protein dynamics. An experimental set-up with low protein consumption is essential for an extensive use of TR-SAXS experiments on protein dynamics. In this direction, a newly developed 20-microchannel microfluidic continuous-flow mixer was combined with SAXS. With this set-up, we demonstrate ubiquitin unfolding dynamics after rapid mixing with the chaotropic agent Guanidinium-HCl within milliseconds using only ∼ 40 nanoliters of the protein sample per scattering image. It is suggested that, in the future, this new TR-SAXS platform will help to increase the use of time-resolved small-angle X-ray scattering, wide-angle X-ray scattering and neutron scattering experiments for studying protein dynamics in the early millisecond regime. The potential research field for this set-up includes protein folding, protein misfolding, aggregation in amyloidogenic diseases, function of intrinsically disordered proteins and various protein-ligand interactions.

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Year:  2013        PMID: 24092048     DOI: 10.1140/epje/i2013-13109-9

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  41 in total

1.  Compactness of the denatured state of a fast-folding protein measured by submillisecond small-angle x-ray scattering.

Authors:  L Pollack; M W Tate; N C Darnton; J B Knight; S M Gruner; W A Eaton; R H Austin
Journal:  Proc Natl Acad Sci U S A       Date:  1999-08-31       Impact factor: 11.205

2.  Heat-induced unfolding of neocarzinostatin, a small all-beta protein investigated by small-angle X-ray scattering.

Authors:  J Pérez; P Vachette; D Russo; M Desmadril; D Durand
Journal:  J Mol Biol       Date:  2001-05-11       Impact factor: 5.469

3.  The unfolding kinetics of ubiquitin captured with single-molecule force-clamp techniques.

Authors:  Michael Schlierf; Hongbin Li; Julio M Fernandez
Journal:  Proc Natl Acad Sci U S A       Date:  2004-04-27       Impact factor: 11.205

4.  Sequence-specific mapping of the interaction between urea and unfolded ubiquitin from ensemble analysis of NMR and small angle scattering data.

Authors:  Jie-rong Huang; Frank Gabel; Malene Ringkjøbing Jensen; Stephan Grzesiek; Martin Blackledge
Journal:  J Am Chem Soc       Date:  2012-02-22       Impact factor: 15.419

5.  Visualizing transient protein-folding intermediates by tryptophan-scanning mutagenesis.

Authors:  Alexis Vallée-Bélisle; Stephen W Michnick
Journal:  Nat Struct Mol Biol       Date:  2012-06-10       Impact factor: 15.369

6.  A thorough dynamic interpretation of residual dipolar couplings in ubiquitin.

Authors:  Nils A Lakomek; Teresa Carlomagno; Stefan Becker; Christian Griesinger; Jens Meiler
Journal:  J Biomol NMR       Date:  2006-02       Impact factor: 2.835

7.  Structural characterization of flexible proteins using small-angle X-ray scattering.

Authors:  Pau Bernadó; Efstratios Mylonas; Maxim V Petoukhov; Martin Blackledge; Dmitri I Svergun
Journal:  J Am Chem Soc       Date:  2007-04-06       Impact factor: 15.419

8.  Silk fiber assembly studied by synchrotron radiation SAXS/WAXS and Raman spectroscopy.

Authors:  Anne Martel; Manfred Burghammer; Richard J Davies; Emanuela Di Cola; Charlotte Vendrely; Christian Riekel
Journal:  J Am Chem Soc       Date:  2008-12-17       Impact factor: 15.419

9.  Unfolding of ubiquitin studied by picosecond time-resolved fluorescence of the tyrosine residue.

Authors:  Melinda Noronha; João C Lima; Margarida Bastos; Helena Santos; António L Maçanita
Journal:  Biophys J       Date:  2004-10       Impact factor: 4.033

Review 10.  Minireview: structural insights into early folding events using continuous-flow time-resolved small-angle X-ray scattering.

Authors:  Sagar V Kathuria; Liang Guo; Rita Graceffa; Raul Barrea; R Paul Nobrega; C Robert Matthews; Thomas C Irving; Osman Bilsel
Journal:  Biopolymers       Date:  2011-03-25       Impact factor: 2.505

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  4 in total

Review 1.  Digested disorder: Quarterly intrinsic disorder digest (July-August-September, 2013).

Authors:  Krishna D Reddy; Shelly DeForte; Vladimir N Uversky
Journal:  Intrinsically Disord Proteins       Date:  2014-05-19

2.  Characterization of protein unfolding by fast cross-linking mass spectrometry using di-ortho-phthalaldehyde cross-linkers.

Authors:  Jian-Hua Wang; Yu-Liang Tang; Zhou Gong; Rohit Jain; Fan Xiao; Yu Zhou; Dan Tan; Qiang Li; Niu Huang; Shu-Qun Liu; Keqiong Ye; Chun Tang; Meng-Qiu Dong; Xiaoguang Lei
Journal:  Nat Commun       Date:  2022-03-18       Impact factor: 17.694

3.  Insights into open/closed conformations of the catalytically active human guanylate kinase as investigated by small-angle X-ray scattering.

Authors:  Rohit Jain; Nazimuddin Khan; Andreas Menzel; Ivan Rajkovic; Manfred Konrad; Simone Techert
Journal:  Eur Biophys J       Date:  2015-10-07       Impact factor: 1.733

4.  Integrated beamline control and data acquisition for small-angle X-ray scattering at the P12 BioSAXS beamline at PETRAIII storage ring DESY.

Authors:  Nelly R Hajizadeh; Daniel Franke; Dmitri I Svergun
Journal:  J Synchrotron Radiat       Date:  2018-04-25       Impact factor: 2.616

  4 in total

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