Literature DB >> 18412426

Origin and control of superlinear polarizability scaling in chemical potential equalization methods.

G Lee Warren1, Joseph E Davis, Sandeep Patel.   

Abstract

Many common chemical potential equalization (muEq) methods are known to suffer from a superlinear scaling of the polarizability with increasing molecular size that interferes with model transferability and prevents the straightforward application of these methods to large, biochemically relevant molecules. In the present work, we systematically investigate the origins of this scaling and the mechanisms whereby some existing methods successfully temper the scaling. We demonstrate several types of topological charge constraints distinct from the usual single molecular charge constraint that can successfully achieve linear polarizability scaling in atomic charge based equilibration models. We find the use of recently employed charge conservation constraints tied to small molecular units to be an effective and practical approach for modulating the polarizability scaling in atomic muEq schemes. We also analyze the scaling behavior of several muEq schemes in the bond representation and derive closed-form expressions for the polarizability scaling in a linear atomic chain model; for a single molecular charge constraint these expressions demonstrate a cubic dependence of the polarizability on molecular size compared with linear scaling obtainable in the case of the atom-atom charge transfer (AACT) and split-charge equilibration (SQE) schemes. Application of our results to the trans N-alkane series reveals that in certain situations, the AACT and SQE schemes can become unstable due to an indefinite Hessian matrix. Consequently, we discuss sufficient criteria for ensuring stability within these schemes.

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Year:  2008        PMID: 18412426      PMCID: PMC2673188          DOI: 10.1063/1.2872603

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  6 in total

1.  Ultranonlocality in time-dependent current-density-functional theory: application to conjugated polymers.

Authors:  M van Faassen; P L de Boeij; R van Leeuwen; J A Berger; J G Snijders
Journal:  Phys Rev Lett       Date:  2002-04-19       Impact factor: 9.161

2.  Development of a polarizable force field for proteins via ab initio quantum chemistry: first generation model and gas phase tests.

Authors:  George A Kaminski; Harry A Stern; B J Berne; Richard A Friesner; Yixiang X Cao; Robert B Murphy; Ruhong Zhou; Thomas A Halgren
Journal:  J Comput Chem       Date:  2002-12       Impact factor: 3.376

3.  Many-body force field models based solely on pairwise Coulomb screening do not simultaneously reproduce correct gas-phase and condensed-phase polarizability limits.

Authors:  Timothy J Giese; Darrin M York
Journal:  J Chem Phys       Date:  2004-06-01       Impact factor: 3.488

4.  Polarization response of water and methanol investigated by a polarizable force field and density functional theory calculations: implications for charge transfer.

Authors:  Riccardo Chelli; Marco Pagliai; Piero Procacci; Gianni Cardini; Vincenzo Schettino
Journal:  J Chem Phys       Date:  2005-02-15       Impact factor: 3.488

5.  A generalization of the charge equilibration method for nonmetallic materials.

Authors:  Razvan A Nistor; Jeliazko G Polihronov; Martin H Müser; Nicholas J Mosey
Journal:  J Chem Phys       Date:  2006-09-07       Impact factor: 3.488

6.  CHARMM fluctuating charge force field for proteins: I parameterization and application to bulk organic liquid simulations.

Authors:  Sandeep Patel; Charles L Brooks
Journal:  J Comput Chem       Date:  2004-01-15       Impact factor: 3.376

  6 in total
  15 in total

1.  Interfacial structure, thermodynamics, and electrostatics of aqueous methanol solutions via molecular dynamics simulations using charge equilibration models.

Authors:  Sandeep Patel; Yang Zhong; Brad A Bauer; Joseph E Davis
Journal:  J Phys Chem B       Date:  2009-07-09       Impact factor: 2.991

2.  Incorporation of charge transfer into the explicit polarization fragment method by grand canonical density functional theory.

Authors:  Miho Isegawa; Jiali Gao; Donald G Truhlar
Journal:  J Chem Phys       Date:  2011-08-28       Impact factor: 3.488

3.  Electrostatic contribution from solvent in modulating single-walled carbon nanotube association.

Authors:  Shu-Ching Ou; Sandeep Patel
Journal:  J Chem Phys       Date:  2014-09-21       Impact factor: 3.488

4.  Molecular modeling and dynamics studies with explicit inclusion of electronic polarizability. Theory and applications.

Authors:  Pedro E M Lopes; Benoit Roux; Alexander D Mackerell
Journal:  Theor Chem Acc       Date:  2009-09       Impact factor: 1.702

5.  Nonadditive empirical force fields for short-chain linear alcohols: methanol to butanol. Hydration free energetics and Kirkwood-Buff analysis using charge equilibration models.

Authors:  Yang Zhong; Sandeep Patel
Journal:  J Phys Chem B       Date:  2010-09-02       Impact factor: 2.991

6.  Phase-transfer energetics of small-molecule alcohols across the water-hexane interface: molecular dynamics simulations using charge equilibration models.

Authors:  Brad A Bauer; Yang Zhong; David J Meninger; Joseph E Davis; Sandeep Patel
Journal:  J Mol Graph Model       Date:  2010-10-01       Impact factor: 2.518

Review 7.  Charge equilibration force fields for molecular dynamics simulations of lipids, bilayers, and integral membrane protein systems.

Authors:  Timothy R Lucas; Brad A Bauer; Sandeep Patel
Journal:  Biochim Biophys Acta       Date:  2011-09-24

8.  Molecular dynamics simulation of hydrated DPPC monolayers using charge equilibration force fields.

Authors:  Timothy R Lucas; Brad A Bauer; Joseph E Davis; Sandeep Patel
Journal:  J Comput Chem       Date:  2011-10-14       Impact factor: 3.376

9.  Temperature dependence and energetics of single ions at the aqueous liquid-vapor interface.

Authors:  Shuching Ou; Sandeep Patel
Journal:  J Phys Chem B       Date:  2013-05-17       Impact factor: 2.991

10.  Spherical monovalent ions at aqueous liquid-vapor interfaces: interfacial stability and induced interface fluctuations.

Authors:  Shuching Ou; Yuan Hu; Sandeep Patel; Hongbin Wan
Journal:  J Phys Chem B       Date:  2013-09-16       Impact factor: 2.991

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