Literature DB >> 21997857

Molecular dynamics simulation of hydrated DPPC monolayers using charge equilibration force fields.

Timothy R Lucas1, Brad A Bauer, Joseph E Davis, Sandeep Patel.   

Abstract

We present results of molecular dynamics simulations of a model DPPC-water monolayer using charge equilibration (CHEQ) force fields, which explicitly account for electronic polarization in a classical treatment of intermolecular interactions. The surface pressure, determined as the difference between the monolayer and pure water surface tensions at 323 K, is predicted to be 22.92 ±1.29 dyne/cm, just slightly below the broad range of experimental values reported for this system. The surface tension for the DPPC-water monolayer is predicted to be 42.35 ±1.16 dyne/cm, in close agreement with the experimentally determined value of 40.9 dyne/cm. This surface tension is also consistent with the value obtained from DPPC monolayer simulations using state-of-the-art nonpolarizable force fields. The current results of simulations predict a monolayer-water potential difference relative to the pure water-air interface of 0.64 ±0.02 Volts, an improved prediction compared to the fixed-charge CHARMM27 force field, yet still overestimating the experimental range of 0.3 to 0.45 Volts. As the charge equilibration model is a purely charge-based model for polarization, the current results suggest that explicitly modeled polarization effects can offer improvements in describing interfacial electrostatics in such systems.
Copyright © 2011 Wiley Periodicals, Inc.

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Year:  2011        PMID: 21997857      PMCID: PMC3488352          DOI: 10.1002/jcc.21927

Source DB:  PubMed          Journal:  J Comput Chem        ISSN: 0192-8651            Impact factor:   3.376


  73 in total

1.  The ionization state and the conformation of Glu-71 in the KcsA K(+) channel.

Authors:  Simon Bernèche; Benoît Roux
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

2.  Atomic Level Anisotropy in the Electrostatic Modeling of Lone Pairs for a Polarizable Force Field Based on the Classical Drude Oscillator.

Authors:  Edward Harder; Victor M Anisimov; Igor V Vorobyov; Pedro E M Lopes; Sergei Y Noskov; Alexander D MacKerell; Benoît Roux
Journal:  J Chem Theory Comput       Date:  2006-11       Impact factor: 6.006

3.  Structure and dynamics of the aqueous liquid-vapor interface: a comprehensive particle-based simulation study.

Authors:  I-F Will Kuo; Christopher J Mundy; Becky L Eggimann; Matthew J McGrath; J Ilja Siepmann; Bin Chen; John Vieceli; Douglas J Tobias
Journal:  J Phys Chem B       Date:  2006-03-02       Impact factor: 2.991

4.  DPPC Langmuir monolayer at the air-water interface: probing the tail and head groups by vibrational sum frequency generation spectroscopy.

Authors:  Gang Ma; Heather C Allen
Journal:  Langmuir       Date:  2006-06-06       Impact factor: 3.882

5.  Water concentration profiles in membranes measured by ESEEM of spin-labeled lipids.

Authors:  Denis A Erilov; Rosa Bartucci; Rita Guzzi; Alexander A Shubin; Alexander G Maryasov; Derek Marsh; Sergei A Dzuba; Luigi Sportelli
Journal:  J Phys Chem B       Date:  2005-06-23       Impact factor: 2.991

6.  Exploring ion permeation energetics in gramicidin A using polarizable charge equilibration force fields.

Authors:  Sandeep Patel; Joseph E Davis; Brad A Bauer
Journal:  J Am Chem Soc       Date:  2009-10-07       Impact factor: 15.419

7.  Structural determinants of water permeability through the lipid membrane.

Authors:  John C Mathai; Stephanie Tristram-Nagle; John F Nagle; Mark L Zeidel
Journal:  J Gen Physiol       Date:  2008-01       Impact factor: 4.086

8.  Biomolecular simulations of membranes: physical properties from different force fields.

Authors:  Shirley W I Siu; Robert Vácha; Pavel Jungwirth; Rainer A Böckmann
Journal:  J Chem Phys       Date:  2008-03-28       Impact factor: 3.488

Review 9.  Dipole potential of lipid membranes.

Authors:  H BROCKMAN
Journal:  Chem Phys Lipids       Date:  1994-09-06       Impact factor: 3.329

10.  Molecular dynamics simulations of liquid condensed to liquid expanded transitions in DPPC monolayers.

Authors:  Delara Mohammad-Aghaie; Emilie Macé; Charles A Sennoga; John M Seddon; Fernando Bresme
Journal:  J Phys Chem B       Date:  2010-01-28       Impact factor: 2.991

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  1 in total

Review 1.  Classical electrostatics for biomolecular simulations.

Authors:  G Andrés Cisneros; Mikko Karttunen; Pengyu Ren; Celeste Sagui
Journal:  Chem Rev       Date:  2013-08-27       Impact factor: 60.622

  1 in total

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