Literature DB >> 16965073

A generalization of the charge equilibration method for nonmetallic materials.

Razvan A Nistor1, Jeliazko G Polihronov, Martin H Müser, Nicholas J Mosey.   

Abstract

Assigning effective atomic charges that properly reproduce the electrostatic fields of molecules is a crucial step in the construction of accurate interatomic potentials. We propose a new approach to calculate these charges, which as previous approaches are, is based on the idea of charge equilibration. However, we only allow charge to flow between covalently bonded neighbors by using the concept of so-called split charges. The semiempirical fit parameters in our approach do not only reflect atomic properties (electronegativity and atomic hardness) but also bond-dependent properties. The new method contains two popular but hitherto disjunct approaches as limiting cases. We apply our methodology to a set of molecules containing the elements silicon, carbon, oxygen, and hydrogen. Effective charges derived from electrostatic potential surfaces can be predicted more than twice as accurately as with previous works, at the expense of one additional fit parameter per bond type controlling the polarizability between two bonded atoms. Additional bond-type parameters can be introduced, but barely improve the results. An increase in accuracy of only 30% over existing techniques is achieved when predicting Mulliken charges. However, this could be improved with additional bond-type parameters.

Entities:  

Year:  2006        PMID: 16965073     DOI: 10.1063/1.2346671

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  12 in total

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Review 2.  Metal Ion Modeling Using Classical Mechanics.

Authors:  Pengfei Li; Kenneth M Merz
Journal:  Chem Rev       Date:  2017-01-03       Impact factor: 60.622

3.  Origin and control of superlinear polarizability scaling in chemical potential equalization methods.

Authors:  G Lee Warren; Joseph E Davis; Sandeep Patel
Journal:  J Chem Phys       Date:  2008-04-14       Impact factor: 3.488

4.  Molecular modeling and dynamics studies with explicit inclusion of electronic polarizability. Theory and applications.

Authors:  Pedro E M Lopes; Benoit Roux; Alexander D Mackerell
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5.  Nonadditive empirical force fields for short-chain linear alcohols: methanol to butanol. Hydration free energetics and Kirkwood-Buff analysis using charge equilibration models.

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Journal:  J Phys Chem B       Date:  2010-09-02       Impact factor: 2.991

6.  The role of molecular modelling and simulation in the discovery and deployment of metal-organic frameworks for gas storage and separation.

Authors:  Arni Sturluson; Melanie T Huynh; Alec R Kaija; Caleb Laird; Sunghyun Yoon; Feier Hou; Zhenxing Feng; Christopher E Wilmer; Yamil J Colón; Yongchul G Chung; Daniel W Siderius; Cory M Simon
Journal:  Mol Simul       Date:  2019       Impact factor: 2.178

7.  NEEMP: software for validation, accurate calculation and fast parameterization of EEM charges.

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Journal:  J Cheminform       Date:  2016-10-17       Impact factor: 5.514

8.  Predicting p Ka values from EEM atomic charges.

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Journal:  J Cheminform       Date:  2013-04-10       Impact factor: 5.514

9.  High-quality and universal empirical atomic charges for chemoinformatics applications.

Authors:  Stanislav Geidl; Tomáš Bouchal; Tomáš Raček; Radka Svobodová Vařeková; Václav Hejret; Aleš Křenek; Ruben Abagyan; Jaroslav Koča
Journal:  J Cheminform       Date:  2015-12-02       Impact factor: 5.514

10.  AtomicChargeCalculator: interactive web-based calculation of atomic charges in large biomolecular complexes and drug-like molecules.

Authors:  Crina-Maria Ionescu; David Sehnal; Francesco L Falginella; Purbaj Pant; Lukáš Pravda; Tomáš Bouchal; Radka Svobodová Vařeková; Stanislav Geidl; Jaroslav Koča
Journal:  J Cheminform       Date:  2015-10-22       Impact factor: 5.514

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