Literature DB >> 18378591

Enzymology of the wood-Ljungdahl pathway of acetogenesis.

Stephen W Ragsdale1.   

Abstract

The biochemistry of acetogenesis is reviewed. The microbes that catalyze the reactions that are central to acetogenesis are described and the focus is on the enzymology of the process. These microbes play a key role in the global carbon cycle, producing over 10 trillion kilograms of acetic acid annually. Acetogens have the ability to anaerobically convert carbon dioxide and CO into acetyl-CoA by the Wood-Ljungdahl pathway, which is linked to energy conservation. They also can convert the six carbons of glucose stoichiometrically into 3 mol of acetate using this pathway. Acetogens and other anaerobic microbes (e.g., sulfate reducers and methanogens) use the Wood-Ljungdahl pathway for cell carbon synthesis. Important enzymes in this pathway that are covered in this review are pyruvate ferredoxin oxidoreductase, CO dehydrogenase/acetyl-CoA synthase, a corrinoid iron-sulfur protein, a methyltransferase, and the enzymes involved in the conversion of carbon dioxide to methyl-tetrahydrofolate.

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Year:  2008        PMID: 18378591      PMCID: PMC3040112          DOI: 10.1196/annals.1419.015

Source DB:  PubMed          Journal:  Ann N Y Acad Sci        ISSN: 0077-8923            Impact factor:   5.691


  77 in total

1.  A single eubacterial origin of eukaryotic pyruvate: ferredoxin oxidoreductase genes: implications for the evolution of anaerobic eukaryotes.

Authors:  D S Horner; R P Hirt; T M Embley
Journal:  Mol Biol Evol       Date:  1999-09       Impact factor: 16.240

2.  Preliminary X-ray crystallographic study of methyltetrahydrofolate: corrinoid/iron sulfur protein methyltransferase from Clostridium thermoaceticum.

Authors:  T I Doukov; S Zhao; C R Ross; D L Roberts; J J Kim; S W Ragsdale; J J Stezowski
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1995-11-01

3.  Crystal structure of a methyltetrahydrofolate- and corrinoid-dependent methyltransferase.

Authors:  T Doukov; J Seravalli; J J Stezowski; S W Ragsdale
Journal:  Structure       Date:  2000-08-15       Impact factor: 5.006

4.  Cloning and expression of the gene cluster encoding key proteins involved in acetyl-CoA synthesis in Clostridium thermoaceticum: CO dehydrogenase, the corrinoid/Fe-S protein, and methyltransferase.

Authors:  D L Roberts; J E James-Hagstrom; D K Garvin; C M Gorst; J A Runquist; J R Baur; F C Haase; S W Ragsdale
Journal:  Proc Natl Acad Sci U S A       Date:  1989-01       Impact factor: 11.205

5.  Primary structure of the thermostable formyltetrahydrofolate synthetase from Clostridium thermoaceticum.

Authors:  C R Lovell; A Przybyla; L G Ljungdahl
Journal:  Biochemistry       Date:  1990-06-19       Impact factor: 3.162

Review 6.  The role of Se, Mo and Fe in the structure and function of carbon monoxide dehydrogenase.

Authors:  O Meyer; L Gremer; R Ferner; M Ferner; H Dobbek; M Gnida; W Meyer-Klaucke; R Huber
Journal:  Biol Chem       Date:  2000 Sep-Oct       Impact factor: 3.915

7.  Substitution of leucine 28 with histidine in the Escherichia coli transcription factor FNR results in increased stability of the [4Fe-4S](2+) cluster to oxygen.

Authors:  D M Bates; C V Popescu; N Khoroshilova; K Vogt; H Beinert; E Münck; P J Kiley
Journal:  J Biol Chem       Date:  2000-03-03       Impact factor: 5.157

8.  Purification of five components from Clostridium thermoaceticum which catalyze synthesis of acetate from pyruvate and methyltetrahydrofolate. Properties of phosphotransacetylase.

Authors:  H L Drake; S I Hu; H G Wood
Journal:  J Biol Chem       Date:  1981-11-10       Impact factor: 5.157

9.  Structures of the N-terminal modules imply large domain motions during catalysis by methionine synthase.

Authors:  John C Evans; Donald P Huddler; Mark T Hilgers; Gail Romanchuk; Rowena G Matthews; Martha L Ludwig
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-29       Impact factor: 11.205

10.  Sequence and expression of the gene encoding the corrinoid/iron-sulfur protein from Clostridium thermoaceticum and reconstitution of the recombinant protein to full activity.

Authors:  W P Lu; I Schiau; J R Cunningham; S W Ragsdale
Journal:  J Biol Chem       Date:  1993-03-15       Impact factor: 5.157

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  82 in total

1.  Bacterial Na+-translocating ferredoxin:NAD+ oxidoreductase.

Authors:  Eva Biegel; Volker Müller
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

Review 2.  Autotrophic carbon fixation in archaea.

Authors:  Ivan A Berg; Daniel Kockelkorn; W Hugo Ramos-Vera; Rafael F Say; Jan Zarzycki; Michael Hügler; Birgit E Alber; Georg Fuchs
Journal:  Nat Rev Microbiol       Date:  2010-05-10       Impact factor: 60.633

Review 3.  Biochemistry, evolution and physiological function of the Rnf complex, a novel ion-motive electron transport complex in prokaryotes.

Authors:  Eva Biegel; Silke Schmidt; José M González; Volker Müller
Journal:  Cell Mol Life Sci       Date:  2010-11-12       Impact factor: 9.261

Review 4.  Carboxylases in natural and synthetic microbial pathways.

Authors:  Tobias J Erb
Journal:  Appl Environ Microbiol       Date:  2011-10-14       Impact factor: 4.792

Review 5.  Frontiers, opportunities, and challenges in biochemical and chemical catalysis of CO2 fixation.

Authors:  Aaron M Appel; John E Bercaw; Andrew B Bocarsly; Holger Dobbek; Daniel L DuBois; Michel Dupuis; James G Ferry; Etsuko Fujita; Russ Hille; Paul J A Kenis; Cheryl A Kerfeld; Robert H Morris; Charles H F Peden; Archie R Portis; Stephen W Ragsdale; Thomas B Rauchfuss; Joost N H Reek; Lance C Seefeldt; Rudolf K Thauer; Grover L Waldrop
Journal:  Chem Rev       Date:  2013-06-14       Impact factor: 60.622

6.  Galacturonate Metabolism in Anaerobic Chemostat Enrichment Cultures: Combined Fermentation and Acetogenesis by the Dominant sp. nov. "Candidatus Galacturonibacter soehngenii".

Authors:  Laura C Valk; Jeroen Frank; Pilar de la Torre-Cortés; Max van 't Hof; Antonius J A van Maris; Jack T Pronk; Mark C M van Loosdrecht
Journal:  Appl Environ Microbiol       Date:  2018-08-31       Impact factor: 4.792

7.  Genomic analysis reveals multiple [FeFe] hydrogenases and hydrogen sensors encoded by treponemes from the H(2)-rich termite gut.

Authors:  Nicholas R Ballor; Ian Paulsen; Jared R Leadbetter
Journal:  Microb Ecol       Date:  2011-08-03       Impact factor: 4.552

Review 8.  Acetogenesis and the Wood-Ljungdahl pathway of CO(2) fixation.

Authors:  Stephen W Ragsdale; Elizabeth Pierce
Journal:  Biochim Biophys Acta       Date:  2008-08-27

9.  Evaluation of endogenous acidic metabolic products associated with carbohydrate metabolism in tumor cells.

Authors:  Elizabeth A Mazzio; Bruce Smith; Karam F A Soliman
Journal:  Cell Biol Toxicol       Date:  2009-09-27       Impact factor: 6.691

Review 10.  Nickel-based Enzyme Systems.

Authors:  Stephen W Ragsdale
Journal:  J Biol Chem       Date:  2009-04-10       Impact factor: 5.157

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