Literature DB >> 18374625

Evolution of bacterial trp operons and their regulation.

Enrique Merino1, Roy A Jensen, Charles Yanofsky.   

Abstract

Survival and replication of most bacteria require the ability to synthesize the amino acid L-tryptophan whenever it is not available from the environment. In this article we describe the genes, operons, proteins, and reactions involved in tryptophan biosynthesis in bacteria, and the mechanisms they use in regulating tryptophan formation. We show that although the reactions of tryptophan biosynthesis are essentially identical, gene organization varies among species--from whole-pathway operons to completely dispersed genes. We also show that the regulatory mechanisms used for these genes vary greatly. We address the question--what are some potential advantages of the gene organization and regulation variation associated with this conserved, important pathway?

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Year:  2008        PMID: 18374625      PMCID: PMC2387123          DOI: 10.1016/j.mib.2008.02.005

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  44 in total

Review 1.  Transcription attenuation: once viewed as a novel regulatory strategy.

Authors:  C Yanofsky
Journal:  J Bacteriol       Date:  2000-01       Impact factor: 3.490

2.  Using studies on tryptophan metabolism to answer basic biological questions.

Authors:  Charles Yanofsky
Journal:  J Biol Chem       Date:  2003-01-29       Impact factor: 5.157

3.  The crystal structure of anthranilate phosphoribosyltransferase from the enterobacterium Pectobacterium carotovorum.

Authors:  Choel Kim; Nguyen Huu Xuong; Steven Edwards; Muh Ching Yee; Glen Spraggon; Stanley E Mills
Journal:  FEBS Lett       Date:  2002-07-17       Impact factor: 4.124

4.  Effects of mutations in the Pseudomonas putida miaA gene: regulation of the trpE and trpGDC operons in P. putida by attenuation.

Authors:  I Olekhnovich; G N Gussin
Journal:  J Bacteriol       Date:  2001-05       Impact factor: 3.490

5.  The tryptophan biosynthesis gene cluster trpCDEGFBA from Pyrococcus kodakaraensis KOD1 is regulated at the transcriptional level and expressed as a single mRNA.

Authors:  X Tang; S Ezaki; S Fujiwara; M Takagi; H Atomi; T Imanaka
Journal:  Mol Gen Genet       Date:  1999-12

6.  Inhibition of the B. subtilis regulatory protein TRAP by the TRAP-inhibitory protein, AT.

Authors:  A Valbuzzi; C Yanofsky
Journal:  Science       Date:  2001-09-14       Impact factor: 47.728

7.  Occurrence of a putative ancient-like isomerase involved in histidine and tryptophan biosynthesis.

Authors:  Francisco Barona-Gómez; David A Hodgson
Journal:  EMBO Rep       Date:  2003-03       Impact factor: 8.807

8.  Significance of two distinct types of tryptophan synthase beta chain in Bacteria, Archaea and higher plants.

Authors:  Gary Xie; Christian Forst; Carol Bonner; Roy A Jensen
Journal:  Genome Biol       Date:  2001-12-14       Impact factor: 13.583

9.  Lateral gene transfer and ancient paralogy of operons containing redundant copies of tryptophan-pathway genes in Xylella species and in heterocystous cyanobacteria.

Authors:  Gary Xie; Carol A Bonner; Tom Brettin; Raphael Gottardo; Nemat O Keyhani; Roy A Jensen
Journal:  Genome Biol       Date:  2003-01-29       Impact factor: 13.583

10.  Dynamic diversity of the tryptophan pathway in chlamydiae: reductive evolution and a novel operon for tryptophan recapture.

Authors:  Gary Xie; Carol A Bonner; Roy A Jensen
Journal:  Genome Biol       Date:  2002-08-29       Impact factor: 13.583

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  49 in total

1.  Attenuation-based dual-fluorescent-protein reporter for screening translation inhibitors.

Authors:  Ilya A Osterman; Irina V Prokhorova; Vasily O Sysoev; Yulia V Boykova; Olga V Efremenkova; Maxim S Svetlov; Vyacheslav A Kolb; Alexey A Bogdanov; Petr V Sergiev; Olga A Dontsova
Journal:  Antimicrob Agents Chemother       Date:  2012-01-17       Impact factor: 5.191

2.  Regulation of an auxiliary, antibiotic-resistant tryptophanyl-tRNA synthetase gene via ribosome-mediated transcriptional attenuation.

Authors:  James J Vecchione; Jason K Sello
Journal:  J Bacteriol       Date:  2010-05-07       Impact factor: 3.490

3.  BarMap: RNA folding on dynamic energy landscapes.

Authors:  Ivo L Hofacker; Christoph Flamm; Christian Heine; Michael T Wolfinger; Gerik Scheuermann; Peter F Stadler
Journal:  RNA       Date:  2010-05-26       Impact factor: 4.942

4.  Preliminary crystallography confirms that the archaeal DNA-binding and tryptophan-sensing regulator TrpY is a dimer.

Authors:  Jacquelyn Cafasso; Babu A Manjasetty; Elizabeth A Karr; Kathleen Sandman; Mark R Chance; John N Reeve
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-10-28

Review 5.  Biochemical features and functional implications of the RNA-based T-box regulatory mechanism.

Authors:  Ana Gutiérrez-Preciado; Tina M Henkin; Frank J Grundy; Charles Yanofsky; Enrique Merino
Journal:  Microbiol Mol Biol Rev       Date:  2009-03       Impact factor: 11.056

Review 6.  Cohesion group approach for evolutionary analysis of aspartokinase, an enzyme that feeds a branched network of many biochemical pathways.

Authors:  Chien-Chi Lo; Carol A Bonner; Gary Xie; Mark D'Souza; Roy A Jensen
Journal:  Microbiol Mol Biol Rev       Date:  2009-12       Impact factor: 11.056

Review 7.  An overview of RNAs with regulatory functions in gram-positive bacteria.

Authors:  Pascale Romby; Emmanuelle Charpentier
Journal:  Cell Mol Life Sci       Date:  2009-10-27       Impact factor: 9.261

8.  mRNA secondary structures fold sequentially but exchange rapidly in vivo.

Authors:  Elisabeth M Mahen; Peter Y Watson; Joseph W Cottrell; Martha J Fedor
Journal:  PLoS Biol       Date:  2010-02-09       Impact factor: 8.029

9.  Metabolic engineering for improving anthranilate synthesis from glucose in Escherichia coli.

Authors:  Víctor E Balderas-Hernández; Andrea Sabido-Ramos; Patricia Silva; Natividad Cabrera-Valladares; Georgina Hernández-Chávez; José L Báez-Viveros; Alfredo Martínez; Francisco Bolívar; Guillermo Gosset
Journal:  Microb Cell Fact       Date:  2009-04-02       Impact factor: 5.328

10.  Mining regulatory 5'UTRs from cDNA deep sequencing datasets.

Authors:  Jonathan Livny; Matthew K Waldor
Journal:  Nucleic Acids Res       Date:  2009-12-07       Impact factor: 16.971

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