Literature DB >> 12634849

Occurrence of a putative ancient-like isomerase involved in histidine and tryptophan biosynthesis.

Francisco Barona-Gómez1, David A Hodgson.   

Abstract

We report the occurrence of an isomerase with a putative (betaalpha)(8)-barrel structure involved in both histidine and trypto-phan biosynthesis in Streptomyces coelicolor A3(2) and Mycobacterium tuberculosis HR37Rv. Deletion of a hisA homologue (SCO2050) putatively encoding N'-[(5'-phosphoribosyl)-formimino]-5 amino-imidazole-4-carboxamide ribonucleotide isomerase from the chromosome of S. coelicolor A3(2) generated a double auxotrophic mutant for histidine and tryptophan. The bifunctional gene SCO2050 and its orthologue Rv1603 from M. tuberculosis complemented both hisA and trpF mutants of Escherichia coli. Expression of the E. coli trpF gene in the S. coelicolor mutant only complemented the tryptophan auxo-trophy, and the hisA gene only complemented the histidine auxotrophy. The discovery of this enzyme, which has a broad-substrate specificity, has implications for the evolution of metabolic pathways and may prove to be important for understanding the evolution of the (betaalpha)(8)-barrels.

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Year:  2003        PMID: 12634849      PMCID: PMC1315899          DOI: 10.1038/sj.embor.embor771

Source DB:  PubMed          Journal:  EMBO Rep        ISSN: 1469-221X            Impact factor:   8.807


  33 in total

1.  Structural conservation in parallel beta/alpha-barrel enzymes that catalyze three sequential reactions in the pathway of tryptophan biosynthesis.

Authors:  M Wilmanns; C C Hyde; D R Davies; K Kirschner; J N Jansonius
Journal:  Biochemistry       Date:  1991-09-24       Impact factor: 3.162

Review 2.  Evolutionary recruitment of biochemically specialized subdivisions of Family I within the protein superfamily of aminotransferases.

Authors:  R A Jensen; W Gu
Journal:  J Bacteriol       Date:  1996-04       Impact factor: 3.490

3.  Cloning and characterization of the histidine biosynthetic gene cluster of Streptomyces coelicolor A3(2).

Authors:  D Limauro; A Avitabile; C Cappellano; A M Puglia; C B Bruni
Journal:  Gene       Date:  1990-05-31       Impact factor: 3.688

Review 4.  Evolution of a biosynthetic pathway: the tryptophan paradigm.

Authors:  I P Crawford
Journal:  Annu Rev Microbiol       Date:  1989       Impact factor: 15.500

5.  Complete nucleotide and deduced amino acid sequences of the Brevibacterium lactofermentum tryptophan operon.

Authors:  K Matsui; K Sano; E Ohtsubo
Journal:  Nucleic Acids Res       Date:  1986-12-22       Impact factor: 16.971

6.  Three-dimensional structure of the bifunctional enzyme N-(5'-phosphoribosyl)anthranilate isomerase-indole-3-glycerol-phosphate synthase from Escherichia coli.

Authors:  J P Priestle; M G Grütter; J L White; M G Vincent; M Kania; E Wilson; T S Jardetzky; K Kirschner; J N Jansonius
Journal:  Proc Natl Acad Sci U S A       Date:  1987-08       Impact factor: 11.205

7.  The pMTL nic- cloning vectors. I. Improved pUC polylinker regions to facilitate the use of sonicated DNA for nucleotide sequencing.

Authors:  S P Chambers; S E Prior; D A Barstow; N P Minton
Journal:  Gene       Date:  1988-08-15       Impact factor: 3.688

8.  The evolution of the histidine biosynthetic genes in prokaryotes: a common ancestor for the hisA and hisF genes.

Authors:  R Fani; P Liò; I Chiarelli; M Bazzicalupo
Journal:  J Mol Evol       Date:  1994-05       Impact factor: 2.395

Review 9.  Enzyme recruitment in evolution of new function.

Authors:  R A Jensen
Journal:  Annu Rev Microbiol       Date:  1976       Impact factor: 15.500

10.  Structure and function of the trp operon control regions of Brevibacterium lactofermentum, a glutamic-acid-producing bacterium.

Authors:  K Sano; K Matsui
Journal:  Gene       Date:  1987       Impact factor: 3.688

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  33 in total

1.  Two-step Ligand Binding in a (βα)8 Barrel Enzyme: SUBSTRATE-BOUND STRUCTURES SHED NEW LIGHT ON THE CATALYTIC CYCLE OF HisA.

Authors:  Annika Söderholm; Xiaohu Guo; Matilda S Newton; Gary B Evans; Joakim Näsvall; Wayne M Patrick; Maria Selmer
Journal:  J Biol Chem       Date:  2015-08-20       Impact factor: 5.157

2.  Two-fold repeated (betaalpha)4 half-barrels may provide a molecular tool for dual substrate specificity.

Authors:  Jochen Kuper; Catharina Doenges; Matthias Wilmanns
Journal:  EMBO Rep       Date:  2005-02       Impact factor: 8.807

Review 3.  Cohesion group approach for evolutionary analysis of TyrA, a protein family with wide-ranging substrate specificities.

Authors:  Carol A Bonner; Terrence Disz; Kaitlyn Hwang; Jian Song; Veronika Vonstein; Ross Overbeek; Roy A Jensen
Journal:  Microbiol Mol Biol Rev       Date:  2008-03       Impact factor: 11.056

4.  Establishing wild-type levels of catalytic activity on natural and artificial (beta alpha)8-barrel protein scaffolds.

Authors:  Jörg Claren; Christoph Malisi; Birte Höcker; Reinhard Sterner
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-23       Impact factor: 11.205

5.  Enzyme evolution beyond gene duplication: A model for incorporating horizontal gene transfer.

Authors:  Lianet Noda-García; Francisco Barona-Gómez
Journal:  Mob Genet Elements       Date:  2013-10-02

Review 6.  Evolution of bacterial trp operons and their regulation.

Authors:  Enrique Merino; Roy A Jensen; Charles Yanofsky
Journal:  Curr Opin Microbiol       Date:  2008-04       Impact factor: 7.934

7.  Bisubstrate specificity in histidine/tryptophan biosynthesis isomerase from Mycobacterium tuberculosis by active site metamorphosis.

Authors:  Anne V Due; Jochen Kuper; Arie Geerlof; Jens Peter von Kries; Matthias Wilmanns
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-14       Impact factor: 11.205

8.  Multifunctional enzymes from reduced genomes - model proteins for simple primordial metabolism?

Authors:  Burckhard Seelig
Journal:  Mol Microbiol       Date:  2017-07-14       Impact factor: 3.501

9.  Crystal structure of the yeast His6 enzyme suggests a reaction mechanism.

Authors:  Sophie Quevillon-Cheruel; Nicolas Leulliot; Marc Graille; Karine Blondeau; Joel Janin; Herman van Tilbeurgh
Journal:  Protein Sci       Date:  2006-06       Impact factor: 6.725

Review 10.  How enzyme promiscuity and horizontal gene transfer contribute to metabolic innovation.

Authors:  Margaret E Glasner; Dat P Truong; Benjamin C Morse
Journal:  FEBS J       Date:  2020-01-10       Impact factor: 5.542

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