Literature DB >> 21045304

Preliminary crystallography confirms that the archaeal DNA-binding and tryptophan-sensing regulator TrpY is a dimer.

Jacquelyn Cafasso1, Babu A Manjasetty, Elizabeth A Karr, Kathleen Sandman, Mark R Chance, John N Reeve.   

Abstract

TrpY regulates the transcription of the metabolically expensive tryptophan-biosynthetic operon in the thermophilic archaeon Methanothermobacter thermautotrophicus. TrpY was crystallized using the hanging-drop method with ammonium sulfate as the precipitant. The crystals belonged to the tetragonal space group P4(3)2(1)2 or P4(1)2(1)2, with unit-cell parameters a = b = 87, c = 147 Å, and diffracted to 2.9 Å resolution. The possible packing of molecules within the cell based on the values of the Matthews coefficient (V(M)) and analysis of the self-rotation function are consistent with the asymmetric unit being a dimer. Determining the structure of TrpY in detail will provide insight into the mechanisms of DNA binding, tryptophan sensing and transcription regulation at high temperature by this novel archaeal protein.

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Year:  2010        PMID: 21045304      PMCID: PMC3001657          DOI: 10.1107/S1744309110036031

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  11 in total

1.  The CCP4 suite: programs for protein crystallography.

Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

2.  DNA-binding proteins and evolution of transcription regulation in the archaea.

Authors:  L Aravind; E V Koonin
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

3.  Regulation of tryptophan operon expression in the archaeon Methanothermobacter thermautotrophicus.

Authors:  Yunwei Xie; John N Reeve
Journal:  J Bacteriol       Date:  2005-09       Impact factor: 3.490

4.  Spontaneous trpY mutants and mutational analysis of the TrpY archaeal transcription regulator.

Authors:  L'ubomíra Cubonová; Kathleen Sandman; Elizabeth A Karr; Andrew J Cochran; John N Reeve
Journal:  J Bacteriol       Date:  2007-03-30       Impact factor: 3.490

Review 5.  Evolution of bacterial trp operons and their regulation.

Authors:  Enrique Merino; Roy A Jensen; Charles Yanofsky
Journal:  Curr Opin Microbiol       Date:  2008-04       Impact factor: 7.934

6.  The transcriptional activator GvpE for the halobacterial gas vesicle genes resembles a basic region leucine-zipper regulatory protein.

Authors:  K Krüger; T Hermann; V Armbruster; F Pfeifer
Journal:  J Mol Biol       Date:  1998-06-19       Impact factor: 5.469

7.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

Review 8.  The eubacterial transcriptional activator Lrp is present in the archaeon Pyrococcus furiosus.

Authors:  N C Kyrpides; C A Ouzounis
Journal:  Trends Biochem Sci       Date:  1995-04       Impact factor: 13.807

9.  The crystal structure of trp aporepressor at 1.8 A shows how binding tryptophan enhances DNA affinity.

Authors:  R G Zhang; A Joachimiak; C L Lawson; R W Schevitz; Z Otwinowski; P B Sigler
Journal:  Nature       Date:  1987 Jun 18-24       Impact factor: 49.962

10.  The structure of trp pseudorepressor at 1.65A shows why indole propionate acts as a trp 'inducer'.

Authors:  C L Lawson; P B Sigler
Journal:  Nature       Date:  1988-06-30       Impact factor: 49.962

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