Literature DB >> 22252829

Attenuation-based dual-fluorescent-protein reporter for screening translation inhibitors.

Ilya A Osterman1, Irina V Prokhorova, Vasily O Sysoev, Yulia V Boykova, Olga V Efremenkova, Maxim S Svetlov, Vyacheslav A Kolb, Alexey A Bogdanov, Petr V Sergiev, Olga A Dontsova.   

Abstract

A reporter construct was created on the basis of the transcription attenuator region of the Escherichia coli tryptophan operon. Dual-fluorescent-protein genes for red fluorescent protein and cerulean fluorescent protein were used as a sensor and internal control of gene expression. The sequence of the attenuator was modified to avoid tryptophan sensitivity while preserving sensitivity to ribosome stalling. Antimicrobial compounds which cause translation arrest at the stage of elongation induce the reporter both in liquid culture and on an agar plate. This reporter could be used for high-throughput screening of translation inhibitors.

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Year:  2012        PMID: 22252829      PMCID: PMC3318315          DOI: 10.1128/AAC.05395-11

Source DB:  PubMed          Journal:  Antimicrob Agents Chemother        ISSN: 0066-4804            Impact factor:   5.191


  45 in total

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2.  An Escherichia coli biosensor strain for amplified and high throughput detection of antimicrobial agents.

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3.  Fluorescence assay for studying the ability of macrolides to induce production of ribosomal methylase.

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4.  Amplified detection of transcriptional and translational inhibitors in bioluminescent Escherichia coli K-12.

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Journal:  J Biomol Screen       Date:  2003-06

5.  An Escherichia coli biosensor capable of detecting both genotoxic and oxidative damage.

Authors:  R J Mitchell; M B Gu
Journal:  Appl Microbiol Biotechnol       Date:  2003-08-23       Impact factor: 4.813

6.  Stress-based identification and classification of antibacterial agents: second-generation Escherichia coli reporter strains and optimization of detection.

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Journal:  Antimicrob Agents Chemother       Date:  2002-08       Impact factor: 5.191

7.  An improved cyan fluorescent protein variant useful for FRET.

Authors:  Mark A Rizzo; Gerald H Springer; Butch Granada; David W Piston
Journal:  Nat Biotechnol       Date:  2004-02-29       Impact factor: 54.908

8.  A further study of misreading of codons induced by streptomycin and neomycin using ribopolynucleotides containing two nucleotides in alternating sequence as templates.

Authors:  J Davies; D S Jones; H G Khorana
Journal:  J Mol Biol       Date:  1966-06       Impact factor: 5.469

9.  The mechanism of action of macrolides, lincosamides and streptogramin B reveals the nascent peptide exit path in the ribosome.

Authors:  Tanel Tenson; Martin Lovmar; Måns Ehrenberg
Journal:  J Mol Biol       Date:  2003-07-25       Impact factor: 5.469

10.  Translational control of transcription termination at the attenuator of the Escherichia coli tryptophan operon.

Authors:  G Zurawski; D Elseviers; G V Stauffer; C Yanofsky
Journal:  Proc Natl Acad Sci U S A       Date:  1978-12       Impact factor: 11.205

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  11 in total

1.  A bacterial homolog YciH of eukaryotic translation initiation factor eIF1 regulates stress-related gene expression and is unlikely to be involved in translation initiation fidelity.

Authors:  Ilya A Osterman; Sergey A Evfratov; Margarita M Dzama; Philipp I Pletnev; Sergey I Kovalchuk; Ivan O Butenko; Olga V Pobeguts; Anna Ya Golovina; Vadim M Govorun; Alexey A Bogdanov; Petr V Sergiev; Olga A Dontsova
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

2.  Sorting Out Antibiotics' Mechanisms of Action: a Double Fluorescent Protein Reporter for High-Throughput Screening of Ribosome and DNA Biosynthesis Inhibitors.

Authors:  Ilya A Osterman; Ekaterina S Komarova; Dmitry I Shiryaev; Ilya A Korniltsev; Irina M Khven; Dmitry A Lukyanov; Vadim N Tashlitsky; Marina V Serebryakova; Olga V Efremenkova; Yan A Ivanenkov; Alexey A Bogdanov; Petr V Sergiev; Olga A Dontsova
Journal:  Antimicrob Agents Chemother       Date:  2016-11-21       Impact factor: 5.191

3.  The last rRNA methyltransferase of E. coli revealed: the yhiR gene encodes adenine-N6 methyltransferase specific for modification of A2030 of 23S ribosomal RNA.

Authors:  Anna Y Golovina; Margarita M Dzama; Ilya A Osterman; Petr V Sergiev; Marina V Serebryakova; Alexey A Bogdanov; Olga A Dontsova
Journal:  RNA       Date:  2012-07-30       Impact factor: 4.942

4.  Amicoumacin a inhibits translation by stabilizing mRNA interaction with the ribosome.

Authors:  Yury S Polikanov; Ilya A Osterman; Teresa Szal; Vadim N Tashlitsky; Marina V Serebryakova; Pavel Kusochek; David Bulkley; Irina A Malanicheva; Tatyana A Efimenko; Olga V Efremenkova; Andrey L Konevega; Karen J Shaw; Alexey A Bogdanov; Marina V Rodnina; Olga A Dontsova; Alexander S Mankin; Thomas A Steitz; Petr V Sergiev
Journal:  Mol Cell       Date:  2014-10-09       Impact factor: 17.970

5.  Mitochondria-targeted antioxidants as highly effective antibiotics.

Authors:  Pavel A Nazarov; Ilya A Osterman; Artem V Tokarchuk; Marina V Karakozova; Galina A Korshunova; Konstantin G Lyamzaev; Maxim V Skulachev; Elena A Kotova; Vladimir P Skulachev; Yuri N Antonenko
Journal:  Sci Rep       Date:  2017-05-03       Impact factor: 4.379

6.  Application of sorting and next generation sequencing to study 5΄-UTR influence on translation efficiency in Escherichia coli.

Authors:  Sergey A Evfratov; Ilya A Osterman; Ekaterina S Komarova; Alexandra M Pogorelskaya; Maria P Rubtsova; Timofei S Zatsepin; Tatiana A Semashko; Elena S Kostryukova; Andrey A Mironov; Evgeny Burnaev; Ekaterina Krymova; Mikhail S Gelfand; Vadim M Govorun; Alexey A Bogdanov; Petr V Sergiev; Olga A Dontsova
Journal:  Nucleic Acids Res       Date:  2017-04-07       Impact factor: 16.971

7.  Comparison of mRNA features affecting translation initiation and reinitiation.

Authors:  Ilya A Osterman; Sergey A Evfratov; Petr V Sergiev; Olga A Dontsova
Journal:  Nucleic Acids Res       Date:  2012-10-23       Impact factor: 16.971

8.  Modified nucleotides m(2)G966/m(5)C967 of Escherichia coli 16S rRNA are required for attenuation of tryptophan operon.

Authors:  Irina V Prokhorova; Ilya A Osterman; Dmitry E Burakovsky; Marina V Serebryakova; Maria A Galyamina; Olga V Pobeguts; Ilya Altukhov; Sergey Kovalchuk; Dmitry G Alexeev; Vadim M Govorun; Alexey A Bogdanov; Petr V Sergiev; Olga A Dontsova
Journal:  Sci Rep       Date:  2013-11-18       Impact factor: 4.379

Review 9.  Techniques for Screening Translation Inhibitors.

Authors:  Ilya A Osterman; Alexey A Bogdanov; Olga A Dontsova; Petr V Sergiev
Journal:  Antibiotics (Basel)       Date:  2016-06-24

10.  Influence of the spacer region between the Shine-Dalgarno box and the start codon for fine-tuning of the translation efficiency in Escherichia coli.

Authors:  Ekaterina S Komarova; Zoya S Chervontseva; Ilya A Osterman; Sergey A Evfratov; Maria P Rubtsova; Timofei S Zatsepin; Tatiana A Semashko; Elena S Kostryukova; Alexey A Bogdanov; Mikhail S Gelfand; Olga A Dontsova; Petr V Sergiev
Journal:  Microb Biotechnol       Date:  2020-03-23       Impact factor: 5.813

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