Literature DB >> 19459617

Equilibrium exchange processes of the aqueous tryptophan dipeptide.

Sayan Bagchi1, Adam K Charnley, Amos B Smith Iii, Robin M Hochstrasser.   

Abstract

The tryptophan dipeptide (NATMA) in D2O shows two conformers having distinctive acetyl end amide-I' transition frequencies. In 2D echo spectroscopy, cross peaks between these conformer transitions are used to show that they are undergoing exchange on the 1.5 ps time scale. Simulations suggest that the accessibility of the amide group to water is restricted in one of the conformations.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19459617      PMCID: PMC2929808          DOI: 10.1021/jp811168x

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  34 in total

1.  Effects of ion atmosphere on hydrogen-bond dynamics in aqueous electrolyte solutions

Authors: 
Journal:  Phys Rev Lett       Date:  2000-07-24       Impact factor: 9.161

Review 2.  NMR methods for characterizing microsecond to millisecond dynamics in recognition and catalysis.

Authors:  Mikael Akke
Journal:  Curr Opin Struct Biol       Date:  2002-10       Impact factor: 6.809

3.  Chemical exchange 2D IR of hydrogen-bond making and breaking.

Authors:  Yung Sam Kim; Robin M Hochstrasser
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-22       Impact factor: 11.205

4.  A computational study of the closed and open states of the influenza a M2 proton channel.

Authors:  Yujie Wu; Gregory A Voth
Journal:  Biophys J       Date:  2005-07-22       Impact factor: 4.033

5.  Watching hydrogen-bond dynamics in a beta-turn by transient two-dimensional infrared spectroscopy.

Authors:  Christoph Kolano; Jan Helbing; Mariusz Kozinski; Wolfram Sander; Peter Hamm
Journal:  Nature       Date:  2006-11-23       Impact factor: 49.962

6.  Determining transition-state geometries in liquids using 2D-IR.

Authors:  James F Cahoon; Karma R Sawyer; Jacob P Schlegel; Charles B Harris
Journal:  Science       Date:  2008-03-28       Impact factor: 47.728

7.  Conformation gating as a mechanism for enzyme specificity.

Authors:  H X Zhou; S T Wlodek; J A McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  1998-08-04       Impact factor: 11.205

8.  Dynamics of amide-I modes of the alanine dipeptide in D2O.

Authors:  Yung Sam Kim; Robin M Hochstrasser
Journal:  J Phys Chem B       Date:  2005-04-14       Impact factor: 2.991

9.  Ultrafast carbon-carbon single-bond rotational isomerization in room-temperature solution.

Authors:  Junrong Zheng; Kyungwon Kwak; Jia Xie; M D Fayer
Journal:  Science       Date:  2006-09-29       Impact factor: 47.728

10.  Electron distributions in peptides and related molecules. 1. An experimental and theoretical study of N-acetyl-L-tryptophan methylamide.

Authors:  M Souhassou; C Lecomte; R H Blessing; A Aubry; M M Rohmer; R Wiest; M Bénard; M Marraud
Journal:  Acta Crystallogr B       Date:  1991-04-01
View more
  6 in total

Review 1.  Watching Proteins Wiggle: Mapping Structures with Two-Dimensional Infrared Spectroscopy.

Authors:  Ayanjeet Ghosh; Joshua S Ostrander; Martin T Zanni
Journal:  Chem Rev       Date:  2017-01-06       Impact factor: 60.622

2.  Tuning Molecular Vibrational Energy Flow within an Aromatic Scaffold via Anharmonic Coupling.

Authors:  Andrew J Schmitz; Hari Datt Pandey; Farzaneh Chalyavi; Tianjiao Shi; Edward E Fenlon; Scott H Brewer; David M Leitner; Matthew J Tucker
Journal:  J Phys Chem A       Date:  2019-12-03       Impact factor: 2.781

3.  A peptide's perspective of water dynamics.

Authors:  Ayanjeet Ghosh; Robin M Hochstrasser
Journal:  Chem Phys       Date:  2011-08-11       Impact factor: 2.348

4.  Synthesis and Evaluation of the Sensitivity and Vibrational Lifetimes of Thiocyanate and Selenocyanate Infrared Reporters.

Authors:  Daniel E Levin; Andrew J Schmitz; Shawn M Hines; Kevin J Hines; Matthew J Tucker; Scott H Brewer; Edward E Fenlon
Journal:  RSC Adv       Date:  2016-04-12       Impact factor: 3.361

5.  Two-Dimensional Infrared Study of Vibrational Coupling between Azide and Nitrile Reporters in a RNA Nucleoside.

Authors:  Andrew J Schmitz; David G Hogle; Xin Sonia Gai; Edward E Fenlon; Scott H Brewer; Matthew J Tucker
Journal:  J Phys Chem B       Date:  2016-08-24       Impact factor: 2.991

6.  2D IR spectroscopy of histidine: probing side-chain structure and dynamics via backbone amide vibrations.

Authors:  Ayanjeet Ghosh; Matthew J Tucker; Feng Gai
Journal:  J Phys Chem B       Date:  2014-04-18       Impact factor: 2.991

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.