Literature DB >> 18364358

Structural and biophysical characterization of human myo-inositol oxygenase.

Ann-Gerd Thorsell1, Camilla Persson, Nina Voevodskaya, Robert D Busam, Martin Hammarström, Susanne Gräslund, Astrid Gräslund, B Martin Hallberg.   

Abstract

Altered inositol metabolism is implicated in a number of diabetic complications. The first committed step in mammalian inositol catabolism is performed by myo-inositol oxygenase (MIOX), which catalyzes a unique four-electron dioxygen-dependent ring cleavage of myo-inositol to D-glucuronate. Here, we present the crystal structure of human MIOX in complex with myo-inosose-1 bound in a terminal mode to the MIOX diiron cluster site. Furthermore, from biochemical and biophysical results from N-terminal deletion mutagenesis we show that the N terminus is important, through coordination of a set of loops covering the active site, in shielding the active site during catalysis. EPR spectroscopy of the unliganded enzyme displays a two-component spectrum that we can relate to an open and a closed active site conformation. Furthermore, based on site-directed mutagenesis in combination with biochemical and biophysical data, we propose a novel role for Lys(127) in governing access to the diiron cluster.

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Year:  2008        PMID: 18364358      PMCID: PMC3258897          DOI: 10.1074/jbc.M800348200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  27 in total

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2.  Metal chelate affinity chromatography, a new approach to protein fractionation.

Authors:  J Porath; J Carlsson; I Olsson; G Belfrage
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3.  Substructure solution with SHELXD.

Authors:  Thomas R Schneider; George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

4.  Structure validation by Calpha geometry: phi,psi and Cbeta deviation.

Authors:  Simon C Lovell; Ian W Davis; W Bryan Arendall; Paul I W de Bakker; J Michael Word; Michael G Prisant; Jane S Richardson; David C Richardson
Journal:  Proteins       Date:  2003-02-15

5.  Three-dimensional structure of the free radical protein of ribonucleotide reductase.

Authors:  P Nordlund; B M Sjöberg; H Eklund
Journal:  Nature       Date:  1990-06-14       Impact factor: 49.962

6.  Crystal structure of a bacterial non-haem iron hydroxylase that catalyses the biological oxidation of methane.

Authors:  A C Rosenzweig; C A Frederick; S J Lippard; P Nordlund
Journal:  Nature       Date:  1993-12-09       Impact factor: 49.962

7.  Expression of myo-inositol oxygenase in tissues susceptible to diabetic complications.

Authors:  Ryan J Arner; K Sandeep Prabhu; Venkatesh Krishnan; Mary C Johnson; C Channa Reddy
Journal:  Biochem Biophys Res Commun       Date:  2005-11-28       Impact factor: 3.575

8.  Evidence for C-H cleavage by an iron-superoxide complex in the glycol cleavage reaction catalyzed by myo-inositol oxygenase.

Authors:  Gang Xing; Yinghui Diao; Lee M Hoffart; Eric W Barr; K Sandeep Prabhu; Ryan J Arner; C Channa Reddy; Carsten Krebs; J Martin Bollinger
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-10       Impact factor: 11.205

9.  Iron and free radical in ribonucleotide reductase. Exchange of iron and Mössbauer spectroscopy of the protein B2 subunit of the Escherichia coli enzyme.

Authors:  C L Atkin; L Thelander; P Reichard; G Lang
Journal:  J Biol Chem       Date:  1973-11-10       Impact factor: 5.157

10.  Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin.

Authors:  G D Van Duyne; R F Standaert; P A Karplus; S L Schreiber; J Clardy
Journal:  J Mol Biol       Date:  1993-01-05       Impact factor: 5.469

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  15 in total

1.  Molecular cloning of the myo-inositol oxygenase gene from the kidney of baboons.

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Journal:  Biomed Rep       Date:  2017-08-25

2.  Structural, EPR, and Mössbauer characterization of (μ-alkoxo)(μ-carboxylato)diiron(II,III) model complexes for the active sites of mixed-valent diiron enzymes.

Authors:  Feifei Li; Mrinmoy Chakrabarti; Yanhong Dong; Karl Kauffmann; Emile L Bominaar; Eckard Münck; Lawrence Que
Journal:  Inorg Chem       Date:  2012-02-23       Impact factor: 5.165

3.  Structure of Ddi2, a highly inducible detoxifying metalloenzyme from Saccharomyces cerevisiae.

Authors:  Jia Li; Yunhua Jia; Aiyang Lin; Michelle Hanna; Linda Chelico; Wei Xiao; Stanley A Moore
Journal:  J Biol Chem       Date:  2019-05-31       Impact factor: 5.157

4.  An HD domain phosphohydrolase active site tailored for oxetanocin-A biosynthesis.

Authors:  Jennifer Bridwell-Rabb; Gyunghoon Kang; Aoshu Zhong; Hung-Wen Liu; Catherine L Drennan
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-14       Impact factor: 11.205

5.  Development of an immunoassay for the kidney-specific protein myo-inositol oxygenase, a potential biomarker of acute kidney injury.

Authors:  Joseph P Gaut; Dan L Crimmins; Matt F Ohlendorf; Christina M Lockwood; Terry A Griest; Nancy A Brada; Masato Hoshi; Bryan Sato; Richard S Hotchkiss; Sanjay Jain; Jack H Ladenson
Journal:  Clin Chem       Date:  2014-01-31       Impact factor: 8.327

6.  Contribution of myo-inositol oxygenase in AGE:RAGE-mediated renal tubulointerstitial injury in the context of diabetic nephropathy.

Authors:  Isha Sharma; Rashmi S Tupe; Aryana K Wallner; Yashpal S Kanwar
Journal:  Am J Physiol Renal Physiol       Date:  2017-09-20

7.  Molecular-Level Insight into the Differential Oxidase and Oxygenase Reactivities of de Novo Due Ferri Proteins.

Authors:  Rae Ana Snyder; Susan E Butch; Amanda J Reig; William F DeGrado; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2015-07-15       Impact factor: 15.419

Review 8.  myo-Inositol oxygenase: a radical new pathway for O(2) and C-H activation at a nonheme diiron cluster.

Authors:  J Martin Bollinger; Yinghui Diao; Megan L Matthews; Gang Xing; Carsten Krebs
Journal:  Dalton Trans       Date:  2008-11-26       Impact factor: 4.390

9.  Organophosphonate-degrading PhnZ reveals an emerging family of HD domain mixed-valent diiron oxygenases.

Authors:  Bigna Wörsdörfer; Mahesh Lingaraju; Neela H Yennawar; Amie K Boal; Carsten Krebs; J Martin Bollinger; Maria-Eirini Pandelia
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-06       Impact factor: 11.205

10.  Circular dichroism, magnetic circular dichroism, and variable temperature variable field magnetic circular dichroism studies of biferrous and mixed-valent myo-inositol oxygenase: insights into substrate activation of O2 reactivity.

Authors:  Rae Ana Snyder; Caleb B Bell; Yinghui Diao; Carsten Krebs; J Martin Bollinger; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2013-10-15       Impact factor: 15.419

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