Literature DB >> 18359790

In vivo measurement of internal and global macromolecular motions in Escherichia coli.

M Jasnin1, M Moulin, M Haertlein, G Zaccai, M Tehei.   

Abstract

We present direct quasielastic neutron scattering measurements, in vivo, of macromolecular dynamics in Escherichia coli. The experiments were performed on a wide range of timescales to cover the large panel of internal and self-diffusion motions. Three major internal processes were extracted at physiological temperature: a fast picosecond process that corresponded to restricted jump diffusion motions and two slower processes that resulted from reorientational motions occurring in approximately 40 ps and 90 ps, respectively. The analysis of the fast process revealed that the cellular environment leads to an appreciable increase in internal molecular flexibility and diffusive motion rates compared with those evaluated in fully hydrated powders. The result showed that the amount of cell water plays a decisive role in internal molecular dynamics. Macromolecular interactions and confinement, however, attenuate slightly the lubricating effect of water, as revealed by the decrease of the in vivo parameters compared with those measured in solution. The study demonstrated that standard sample preparations do not mimic accurately the physiological environment and suggested that intracellular complexity participates in functional dynamics necessary for biological activity. Furthermore, the method allowed the extraction of the self-diffusion of E. coli macromolecules, which presented similar parameters as those extracted for hemoglobin in red blood cells.

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Year:  2008        PMID: 18359790      PMCID: PMC2440467          DOI: 10.1529/biophysj.107.124420

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  24 in total

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Review 2.  Macromolecular crowding: obvious but underappreciated.

Authors:  R J Ellis
Journal:  Trends Biochem Sci       Date:  2001-10       Impact factor: 13.807

Review 3.  Protein dynamics studied by neutron scattering.

Authors:  Frank Gabel; Dominique Bicout; Ursula Lehnert; Moeava Tehei; Martin Weik; Giuseppe Zaccai
Journal:  Q Rev Biophys       Date:  2002-11       Impact factor: 5.318

4.  Adaptation to extreme environments: macromolecular dynamics in bacteria compared in vivo by neutron scattering.

Authors:  Moeava Tehei; Bruno Franzetti; Dominique Madern; Margaret Ginzburg; Ben Z Ginzburg; Marie-Thérèse Giudici-Orticoni; Mireille Bruschi; Giuseppe Zaccai
Journal:  EMBO Rep       Date:  2004-01       Impact factor: 8.807

Review 5.  Protein motions promote catalysis.

Authors:  Audrey Tousignant; Joelle N Pelletier
Journal:  Chem Biol       Date:  2004-08

6.  Protein dynamics and the immunological evolution of molecular recognition.

Authors:  Ralph Jimenez; Georgina Salazar; Jun Yin; Taiha Joo; Floyd E Romesberg
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-04       Impact factor: 11.205

Review 7.  Cytoarchitecture and physical properties of cytoplasm: volume, viscosity, diffusion, intracellular surface area.

Authors:  K Luby-Phelps
Journal:  Int Rev Cytol       Date:  2000

8.  Microscopic diffusion and hydrodynamic interactions of hemoglobin in red blood cells.

Authors:  Wolfgang Doster; Stéphane Longeville
Journal:  Biophys J       Date:  2007-05-18       Impact factor: 4.033

Review 9.  Conformational substates in proteins.

Authors:  H Frauenfelder; F Parak; R D Young
Journal:  Annu Rev Biophys Biophys Chem       Date:  1988

10.  Dynamics of ligand binding to myoglobin.

Authors:  R H Austin; K W Beeson; L Eisenstein; H Frauenfelder; I C Gunsalus
Journal:  Biochemistry       Date:  1975-12-02       Impact factor: 3.162

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  20 in total

1.  Macromolecular dynamics in red blood cells investigated using neutron spectroscopy.

Authors:  Andreas Maximilian Stadler; Lambert van Eijck; Franz Demmel; Gerhard Artmann
Journal:  J R Soc Interface       Date:  2010-08-25       Impact factor: 4.118

2.  Hemoglobin dynamics in red blood cells: correlation to body temperature.

Authors:  A M Stadler; I Digel; G M Artmann; J P Embs; G Zaccai; G Büldt
Journal:  Biophys J       Date:  2008-08-15       Impact factor: 4.033

3.  Correlation between supercoiling and conformational motions of the bacterial flagellar filament.

Authors:  Andreas M Stadler; Tobias Unruh; Keiichi Namba; Fadel Samatey; Giuseppe Zaccai
Journal:  Biophys J       Date:  2013-11-05       Impact factor: 4.033

Review 4.  Neutrons for biologists: a beginner's guide, or why you should consider using neutrons.

Authors:  Jeremy H Lakey
Journal:  J R Soc Interface       Date:  2009-08-05       Impact factor: 4.118

Review 5.  Atomic-scale dynamics inside living cells explored by neutron scattering.

Authors:  Marion Jasnin
Journal:  J R Soc Interface       Date:  2009-07-08       Impact factor: 4.118

6.  From powder to solution: hydration dependence of human hemoglobin dynamics correlated to body temperature.

Authors:  A M Stadler; I Digel; J P Embs; T Unruh; M Tehei; G Zaccai; G Büldt; G M Artmann
Journal:  Biophys J       Date:  2009-06-17       Impact factor: 4.033

7.  Internal motions of actin characterized by quasielastic neutron scattering.

Authors:  Satoru Fujiwara; Marie Plazanet; Fumiko Matsumoto; Toshiro Oda
Journal:  Eur Biophys J       Date:  2011-01-20       Impact factor: 1.733

8.  Protein self-diffusion in crowded solutions.

Authors:  Felix Roosen-Runge; Marcus Hennig; Fajun Zhang; Robert M J Jacobs; Michael Sztucki; Helmut Schober; Tilo Seydel; Frank Schreiber
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-05       Impact factor: 11.205

9.  Neutron fibre diffraction studies of amyloid using H2O/D2O isotopic replacement.

Authors:  Sarah M Tiggelaar; Estelle Mossou; Phil Callow; Shirley Callow; Susana C M Teixeira; Edward P Mitchell; Anna Mitraki; V Trevor Forsyth
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2011-02-23

10.  Coupled flexibility change in cytochrome P450cam substrate binding determined by neutron scattering, NMR, and molecular dynamics simulation.

Authors:  Yinglong Miao; Zheng Yi; Carey Cantrell; Dennis C Glass; Jerome Baudry; Nitin Jain; Jeremy C Smith
Journal:  Biophys J       Date:  2012-11-20       Impact factor: 4.033

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