Literature DB >> 17522674

Nuclear organization of the genome and the potential for gene regulation.

Peter Fraser1, Wendy Bickmore.   

Abstract

Much work has been published on the cis-regulatory elements that affect gene function locally, as well as on the biochemistry of the transcription factors and chromatin- and histone-modifying complexes that influence gene expression. However, surprisingly little information is available about how these components are organized within the three-dimensional space of the nucleus. Technological advances are now helping to identify the spatial relationships and interactions of genes and regulatory elements in the nucleus and are revealing an unexpectedly extensive network of communication within and between chromosomes. A crucial unresolved issue is the extent to which this organization affects gene function, rather than just reflecting it.

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Year:  2007        PMID: 17522674     DOI: 10.1038/nature05916

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  341 in total

1.  Functional nuclear topography of transcriptionally inducible extra-chromosomal transgene clusters.

Authors:  Manja Meggendorfer; Claudia Weierich; Horst Wolff; Ruth Brack-Werner; Thomas Cremer
Journal:  Chromosome Res       Date:  2010-06-08       Impact factor: 5.239

2.  Hox in space: gene cluster regulation linked to folding of chromatin.

Authors:  Alexey V Pindyurin; Bas van Steensel
Journal:  Nucleus       Date:  2012-03-01       Impact factor: 4.197

3.  A crossroad of microRNAs and immediate early genes (IEGs) encoding oncogenic transcription factors in breast cancer.

Authors:  Aldema Sas-Chen; Roi Avraham; Yosef Yarden
Journal:  J Mammary Gland Biol Neoplasia       Date:  2012-02-12       Impact factor: 2.673

4.  Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture.

Authors:  Eitan Yaffe; Amos Tanay
Journal:  Nat Genet       Date:  2011-10-16       Impact factor: 38.330

5.  Twenty-four chromosome FISH in human IVF embryos reveals patterns of post-zygotic chromosome segregation and nuclear organisation.

Authors:  D Ioannou; K G L Fonseka; E J Meershoek; A R Thornhill; A Abogrein; M Ellis; D K Griffin
Journal:  Chromosome Res       Date:  2012-06-29       Impact factor: 5.239

Review 6.  Epigenetics and T helper 1 differentiation.

Authors:  Thomas M Aune; Patrick L Collins; Shaojing Chang
Journal:  Immunology       Date:  2008-12-18       Impact factor: 7.397

7.  HiPiler: Visual Exploration of Large Genome Interaction Matrices with Interactive Small Multiples.

Authors:  Fritz Lekschas; Benjamin Bach; Peter Kerpedjiev; Nils Gehlenborg; Hanspeter Pfister
Journal:  IEEE Trans Vis Comput Graph       Date:  2017-08-29       Impact factor: 4.579

8.  Spatially confined folding of chromatin in the interphase nucleus.

Authors:  Julio Mateos-Langerak; Manfred Bohn; Wim de Leeuw; Osdilly Giromus; Erik M M Manders; Pernette J Verschure; Mireille H G Indemans; Hinco J Gierman; Dieter W Heermann; Roel van Driel; Sandra Goetze
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-20       Impact factor: 11.205

Review 9.  Nuclear organization mediates cancer-compromised genetic and epigenetic control.

Authors:  Sayyed K Zaidi; Andrew J Fritz; Kirsten M Tracy; Jonathan A Gordon; Coralee E Tye; Joseph Boyd; Andre J Van Wijnen; Jeffrey A Nickerson; Antony N Imbalzano; Jane B Lian; Janet L Stein; Gary S Stein
Journal:  Adv Biol Regul       Date:  2018-05-09

10.  Random Motion of Chromatin Is Influenced by Lamin A Interconnections.

Authors:  Fereydoon Taheri; Buse Isbilir; Gabriele Müller; Jan W Krieger; Giuseppe Chirico; Jörg Langowski; Katalin Tóth
Journal:  Biophys J       Date:  2018-05-11       Impact factor: 4.033

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