Literature DB >> 9305948

Ultraviolet resonance Raman spectra of Trp-182 and Trp-189 in bacteriorhodopsin: novel information on the structure of Trp-182 and its steric interaction with retinal.

S Hashimoto1, K Obata, H Takeuchi, R Needleman, J K Lanyi.   

Abstract

Ultraviolet (244 nm) resonance Raman spectra of Trp-182 and Trp-189 in bacteriorhodopsin were obtained by subtracting the spectrum of the mutants, Trp-182-->Phe or Trp-189-->Phe, from that of the wild-type. Analysis of the spectra shows that the chi2,1 torsion angle about the Cbeta-C3 bond is +/-93 degrees for Trp-182 and +/-100 degrees for Trp-189. Both Trp residues are moderately hydrogen bonded to proton acceptors at their indolyl nitrogens in hydrophobic environments. The environmental hydrophobicity is particularly strong for Trp-182, as judged from the splitting of the W7 Raman band to a triplet. The Raman information on the structure and environment of Trp-189 is consistent with the molecular model from electron diffraction [Grigorieff et al. (1996) J. Mol. Biol. 259, 393-421]. On the other hand, the chi2,1 angle and the hydrogen-bonding state of Trp-182 found here differ from those in the model structure. Revision of the model to correspond to the Raman findings would require a 60 degrees rotation of the Trp-182 indole ring about the Cbeta-C3 bond toward the chromophore retinal and the presence of a water molecule that is hydrogen bonded to the indolyl nitrogen. The triplet feature of the W7 band of Trp-182 is attributable to unusually strong steric repulsion between the indole ring and the 9- and 13-methyl groups of the retinal. Resonance Raman spectra in the visible suggest that this steric conflict destabilizes the 13-cis isomeric state of the retinal.

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Year:  1997        PMID: 9305948     DOI: 10.1021/bi971404f

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  7 in total

Review 1.  Solid-state 2H NMR spectroscopy of retinal proteins in aligned membranes.

Authors:  Michael F Brown; Maarten P Heyn; Constantin Job; Suhkmann Kim; Stephan Moltke; Koji Nakanishi; Alexander A Nevzorov; Andrey V Struts; Gilmar F J Salgado; Ingrid Wallat
Journal:  Biochim Biophys Acta       Date:  2007-10-23

2.  Hydration dependence of active core fluctuations in bacteriorhodopsin.

Authors:  Kathleen Wood; Ursula Lehnert; Brigitte Kessler; Giuseppe Zaccai; Dieter Oesterhelt
Journal:  Biophys J       Date:  2008-03-13       Impact factor: 4.033

3.  UV Resonance Raman Characterization of a Substrate Bound to Human Indoleamine 2,3-Dioxygenase 1.

Authors:  Sachiko Yanagisawa; Kure'e Kayama; Masayuki Hara; Hiroshi Sugimoto; Yoshitsugu Shiro; Takashi Ogura
Journal:  Biophys J       Date:  2019-07-19       Impact factor: 4.033

4.  Insights into Protein Structure and Dynamics by Ultraviolet and Visible Resonance Raman Spectroscopy.

Authors:  Ignacio López-Peña; Brian S Leigh; Diana E Schlamadinger; Judy E Kim
Journal:  Biochemistry       Date:  2015-07-29       Impact factor: 3.162

5.  Tryptophan as a probe of photosystem I electron transfer reactions: a UV resonance Raman study.

Authors:  Jun Chen; Shana L Bender; James M Keough; Bridgette A Barry
Journal:  J Phys Chem B       Date:  2009-08-20       Impact factor: 2.991

6.  Bacteriorhodopsin analog regenerated with 13-desmethyl-13-iodoretinal.

Authors:  Kenji Hiraki; Toshiaki Hamanaka; Xiang-Guo Zheng; Teturo Shinada; Jong-Moon Kim; Kazuo Yoshihara; Yuji Kito
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

7.  Extension of the tryptophan chi2,1 dihedral angle-W3 band frequency relationship to a full rotation: correlations and caveats.

Authors:  Laura J Juszczak; Ruel Z B Desamero
Journal:  Biochemistry       Date:  2009-03-31       Impact factor: 3.162

  7 in total

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