Literature DB >> 18326568

ATP-induced shrinkage of DNA with MukB protein and the MukBEF complex of Escherichia coli.

Ning Chen1, Anatoly A Zinchenko, Yuko Yoshikawa, Sumiko Araki, Shun Adachi, Mitsuyoshi Yamazoe, Sota Hiraga, Kenichi Yoshikawa.   

Abstract

Fluorescence microscopic observation of individual T4 DNA molecules revealed that the MukBEF complex (bacterial condensin) and its subunit, the MukB (a member of the SMC [structural maintenance of chromosomes] superfamily) homodimer, of Escherichia coli markedly shrunk large DNA molecules in the presence of hydrolyzable ATP. In contrast, in the presence of ADP or ATP-gammaS, the conformation of DNA was almost not changed. This suggests that the ATPase activity of subunit MukB is essential for shrinking large DNA molecules. Stretching experiments on the shrunken DNA molecules in the presence of ATP and MukBEF indicated a cross-bridging interaction between DNA molecules.

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Year:  2008        PMID: 18326568      PMCID: PMC2394998          DOI: 10.1128/JB.01863-07

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  22 in total

1.  Complex formation of MukB, MukE and MukF proteins involved in chromosome partitioning in Escherichia coli.

Authors:  M Yamazoe; T Onogi; Y Sunako; H Niki; K Yamanaka; T Ichimura; S Hiraga
Journal:  EMBO J       Date:  1999-11-01       Impact factor: 11.598

2.  Mutual suppression of mukB and seqA phenotypes might arise from their opposing influences on the Escherichia coli nucleoid structure.

Authors:  T Weitao; K Nordström; S Dasgupta
Journal:  Mol Microbiol       Date:  1999-10       Impact factor: 3.501

Review 3.  Toroidal DNA condensates: unraveling the fine structure and the role of nucleation in determining size.

Authors:  Nicholas V Hud; Igor D Vilfan
Journal:  Annu Rev Biophys Biomol Struct       Date:  2005

4.  DNA reshaping by MukB. Right-handed knotting, left-handed supercoiling.

Authors:  Zoya M Petrushenko; Chien-Hung Lai; Rachna Rai; Valentin V Rybenkov
Journal:  J Biol Chem       Date:  2005-12-20       Impact factor: 5.157

5.  Comparison of MukB homodimer versus MukBEF complex molecular architectures by electron microscopy reveals a higher-order multimerization.

Authors:  Kyoko Matoba; Mitsuyoshi Yamazoe; Kouta Mayanagi; Kosuke Morikawa; Sota Hiraga
Journal:  Biochem Biophys Res Commun       Date:  2005-08-05       Impact factor: 3.575

Review 6.  DNA condensation.

Authors:  V A Bloomfield
Journal:  Curr Opin Struct Biol       Date:  1996-06       Impact factor: 6.809

7.  Mitotic chromosome condensation.

Authors:  D Koshland; A Strunnikov
Journal:  Annu Rev Cell Dev Biol       Date:  1996       Impact factor: 13.827

8.  ATP-dependent aggregation of single-stranded DNA by a bacterial SMC homodimer.

Authors:  M Hirano; T Hirano
Journal:  EMBO J       Date:  1998-12-01       Impact factor: 11.598

9.  Interaction of the N-terminal domain of MukB with the bacterial tubulin homologue FtsZ.

Authors:  A Lockhart; J Kendrick-Jones
Journal:  FEBS Lett       Date:  1998-07-03       Impact factor: 4.124

10.  The symmetrical structure of structural maintenance of chromosomes (SMC) and MukB proteins: long, antiparallel coiled coils, folded at a flexible hinge.

Authors:  T E Melby; C N Ciampaglio; G Briscoe; H P Erickson
Journal:  J Cell Biol       Date:  1998-09-21       Impact factor: 10.539

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  16 in total

1.  Escherichia coli condensin MukB stimulates topoisomerase IV activity by a direct physical interaction.

Authors:  Yinyin Li; Nichole K Stewart; Anthony J Berger; Seychelle Vos; Allyn J Schoeffler; James M Berger; Brian T Chait; Martha G Oakley
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

Review 2.  Dynamics of the bacterial SMC complex and SMC-like proteins involved in DNA repair.

Authors:  Peter L Graumann; Tobias Knust
Journal:  Chromosome Res       Date:  2009       Impact factor: 5.239

3.  Structural basis for the MukB-topoisomerase IV interaction and its functional implications in vivo.

Authors:  Seychelle M Vos; Nichole K Stewart; Martha G Oakley; James M Berger
Journal:  EMBO J       Date:  2013-10-04       Impact factor: 11.598

4.  MukB-mediated Catenation of DNA Is ATP and MukEF Independent.

Authors:  Soon Bahng; Ryo Hayama; Kenneth J Marians
Journal:  J Biol Chem       Date:  2016-10-03       Impact factor: 5.157

5.  The bacterial condensin MukB compacts DNA by sequestering supercoils and stabilizing topologically isolated loops.

Authors:  Rupesh Kumar; Małgorzata Grosbart; Pearl Nurse; Soon Bahng; Claire L Wyman; Kenneth J Marians
Journal:  J Biol Chem       Date:  2017-08-25       Impact factor: 5.157

6.  The role of MukE in assembling a functional MukBEF complex.

Authors:  Melanie Gloyd; Rodolfo Ghirlando; Alba Guarné
Journal:  J Mol Biol       Date:  2011-08-10       Impact factor: 5.469

Review 7.  MukBEF, a chromosomal organizer.

Authors:  Valentin V Rybenkov; Viridiana Herrera; Zoya M Petrushenko; Hang Zhao
Journal:  J Mol Microbiol Biotechnol       Date:  2015-02-17

Review 8.  The chromosome cycle of prokaryotes.

Authors:  Andrei Kuzminov
Journal:  Mol Microbiol       Date:  2013-09-08       Impact factor: 3.501

9.  The crystal structure of the hinge domain of the Escherichia coli structural maintenance of chromosomes protein MukB.

Authors:  Yinyin Li; Allyn J Schoeffler; James M Berger; Martha G Oakley
Journal:  J Mol Biol       Date:  2009-10-22       Impact factor: 5.469

10.  Genetic interactions of smc, ftsK, and parB genes in Streptomyces coelicolor and their developmental genome segregation phenotypes.

Authors:  Rebekah M Dedrick; Hans Wildschutte; Joseph R McCormick
Journal:  J Bacteriol       Date:  2008-10-31       Impact factor: 3.490

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