Literature DB >> 27697840

MukB-mediated Catenation of DNA Is ATP and MukEF Independent.

Soon Bahng1, Ryo Hayama1, Kenneth J Marians2.   

Abstract

Properly condensed chromosomes are necessary for accurate segregation of the sisters after DNA replication. The Escherichia coli condesin is MukB, a structural maintenance of chromosomes (SMC)-like protein, which forms a complex with MukE and the kleisin MukF. MukB is known to be able to mediate knotting of a DNA ring, an intramolecular reaction. In our investigations of how MukB condenses DNA we discovered that it can also mediate catenation of two DNA rings, an intermolecular reaction. This activity of MukB requires DNA binding by the head domains of the protein but does not require either ATP or its partner proteins MukE or MukF. The ability of MukB to mediate DNA catenation underscores its potential for bringing distal regions of a chromosome together.
© 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  DNA; DNA binding protein; DNA enzymes; DNA structure; DNA topology; nucleic acid enzymology

Mesh:

Substances:

Year:  2016        PMID: 27697840      PMCID: PMC5104925          DOI: 10.1074/jbc.M116.749994

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  36 in total

1.  MukEF Is required for stable association of MukB with the chromosome.

Authors:  Weifeng She; Qinhong Wang; Elena A Mordukhova; Valentin V Rybenkov
Journal:  J Bacteriol       Date:  2007-07-20       Impact factor: 3.490

2.  ATP-induced shrinkage of DNA with MukB protein and the MukBEF complex of Escherichia coli.

Authors:  Ning Chen; Anatoly A Zinchenko; Yuko Yoshikawa; Sumiko Araki; Shun Adachi; Mitsuyoshi Yamazoe; Sota Hiraga; Kenichi Yoshikawa
Journal:  J Bacteriol       Date:  2008-03-07       Impact factor: 3.490

Review 3.  The major architects of chromatin: architectural proteins in bacteria, archaea and eukaryotes.

Authors:  Martijn S Luijsterburg; Malcolm F White; Roel van Driel; Remus Th Dame
Journal:  Crit Rev Biochem Mol Biol       Date:  2008 Nov-Dec       Impact factor: 8.250

4.  The MukB-ParC interaction affects the intramolecular, not intermolecular, activities of topoisomerase IV.

Authors:  Ryo Hayama; Soon Bahng; Mehmet E Karasu; Kenneth J Marians
Journal:  J Biol Chem       Date:  2013-01-24       Impact factor: 5.157

Review 5.  SMC complexes: from DNA to chromosomes.

Authors:  Frank Uhlmann
Journal:  Nat Rev Mol Cell Biol       Date:  2016-04-14       Impact factor: 94.444

6.  Identification of two new genes, mukE and mukF, involved in chromosome partitioning in Escherichia coli.

Authors:  K Yamanaka; T Ogura; H Niki; S Hiraga
Journal:  Mol Gen Genet       Date:  1996-02-25

7.  High magnesium content of Escherichia coli B.

Authors:  M L Moncany; E Kellenberger
Journal:  Experientia       Date:  1981

8.  The SMC1-SMC3 cohesin heterodimer structures DNA through supercoiling-dependent loop formation.

Authors:  Mingxuan Sun; Tatsuya Nishino; John F Marko
Journal:  Nucleic Acids Res       Date:  2013-04-24       Impact factor: 16.971

9.  Dynamic assembly, localization and proteolysis of the Bacillus subtilis SMC complex.

Authors:  Judita Mascarenhas; Arsen V Volkov; Cornelia Rinn; Jens Schiener; Reinhard Guckenberger; Peter L Graumann
Journal:  BMC Cell Biol       Date:  2005-06-29       Impact factor: 4.241

10.  SMC condensin entraps chromosomal DNA by an ATP hydrolysis dependent loading mechanism in Bacillus subtilis.

Authors:  Larissa Wilhelm; Frank Bürmann; Anita Minnen; Ho-Chul Shin; Christopher P Toseland; Byung-Ha Oh; Stephan Gruber
Journal:  Elife       Date:  2015-05-07       Impact factor: 8.140

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  8 in total

1.  The bacterial condensin MukB compacts DNA by sequestering supercoils and stabilizing topologically isolated loops.

Authors:  Rupesh Kumar; Małgorzata Grosbart; Pearl Nurse; Soon Bahng; Claire L Wyman; Kenneth J Marians
Journal:  J Biol Chem       Date:  2017-08-25       Impact factor: 5.157

2.  The MukB-topoisomerase IV interaction is required for proper chromosome compaction.

Authors:  Rupesh Kumar; Pearl Nurse; Soon Bahng; Chong M Lee; Kenneth J Marians
Journal:  J Biol Chem       Date:  2017-08-25       Impact factor: 5.157

3.  Protease-deficient SOS constitutive cells have RecN-dependent cell division phenotypes.

Authors:  Alyson R Warr; Anastasiia N Klimova; Amy N Nwaobasi; Steven J Sandler
Journal:  Mol Microbiol       Date:  2018-12-05       Impact factor: 3.501

4.  Intersubunit and intrasubunit interactions driving the MukBEF ATPase.

Authors:  Soon Bahng; Rupesh Kumar; Kenneth J Marians
Journal:  J Biol Chem       Date:  2022-04-20       Impact factor: 5.486

5.  MukB ATPases are regulated independently by the N- and C-terminal domains of MukF kleisin.

Authors:  Katarzyna Zawadzka; Pawel Zawadzki; Rachel Baker; Karthik V Rajasekar; Florence Wagner; David J Sherratt; Lidia K Arciszewska
Journal:  Elife       Date:  2018-01-11       Impact factor: 8.140

6.  The MukB-topoisomerase IV interaction mutually suppresses their catalytic activities.

Authors:  Rupesh Kumar; Soon Bahng; Kenneth J Marians
Journal:  Nucleic Acids Res       Date:  2022-03-21       Impact factor: 16.971

7.  DNA sliding and loop formation by E. coli SMC complex: MukBEF.

Authors:  Man Zhou
Journal:  Biochem Biophys Rep       Date:  2022-06-22

8.  Condensin minimizes topoisomerase II-mediated entanglements of DNA in vivo.

Authors:  Sílvia Dyson; Joana Segura; Belén Martínez-García; Antonio Valdés; Joaquim Roca
Journal:  EMBO J       Date:  2020-11-06       Impact factor: 11.598

  8 in total

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