Literature DB >> 18321098

Protein structure determination from 13C spin-diffusion solid-state NMR spectroscopy.

Theofanis Manolikas1, Torsten Herrmann, Beat H Meier.   

Abstract

Proton-driven 13C spin diffusion (PDSD) is a simple and robust two-dimensional NMR experiment. It leads to spectra with a high signal-to-noise ratio in which cross-peaks contain information about internuclear distances. We show that the total information content is sufficient to determine the atomic-resolution structure of a small protein from a single, uniformly 13C-, 15N-labeled microcrystalline sample. For the example of ubiquitin, the structure was determined by a manual procedure followed by an automatic optimization of the manual structure as well as by a fully automated structure determination approach. The relationship between internuclear distances and cross-peak intensities in the spectra is investigated.

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Year:  2008        PMID: 18321098     DOI: 10.1021/ja078039s

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  44 in total

1.  VITAL NMR: using chemical shift derived secondary structure information for a limited set of amino acids to assess homology model accuracy.

Authors:  Michael C Brothers; Anna E Nesbitt; Michael J Hallock; Sanjeewa G Rupasinghe; Ming Tang; Jason Harris; Jerome Baudry; Mary A Schuler; Chad M Rienstra
Journal:  J Biomol NMR       Date:  2011-11-03       Impact factor: 2.835

2.  Simultaneous acquisition of PAR and PAIN spectra.

Authors:  Anders B Nielsen; Kathrin Székely; Julia Gath; Matthias Ernst; Niels Chr Nielsen; Beat H Meier
Journal:  J Biomol NMR       Date:  2012-02-28       Impact factor: 2.835

3.  Ultrahigh resolution protein structures using NMR chemical shift tensors.

Authors:  Benjamin J Wylie; Lindsay J Sperling; Andrew J Nieuwkoop; W Trent Franks; Eric Oldfield; Chad M Rienstra
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-03       Impact factor: 11.205

Review 4.  Prions: En route from structural models to structures.

Authors:  Anja Böckmann; Beat H Meier
Journal:  Prion       Date:  2010-04-05       Impact factor: 3.931

5.  Paramagnetic shifts in solid-state NMR of proteins to elicit structural information.

Authors:  Stéphane Balayssac; Ivano Bertini; Anusarka Bhaumik; Moreno Lelli; Claudio Luchinat
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-06       Impact factor: 11.205

6.  PAIN with and without PAR: variants for third-spin assisted heteronuclear polarization transfer.

Authors:  Vipin Agarwal; Mariana Sardo; Ingo Scholz; Anja Böckmann; Matthias Ernst; Beat H Meier
Journal:  J Biomol NMR       Date:  2013-06-27       Impact factor: 2.835

7.  Characterization of different water pools in solid-state NMR protein samples.

Authors:  Anja Böckmann; Carole Gardiennet; René Verel; Andreas Hunkeler; Antoine Loquet; Guido Pintacuda; Lyndon Emsley; Beat H Meier; Anne Lesage
Journal:  J Biomol NMR       Date:  2009-11       Impact factor: 2.835

8.  Long-range correlations between aliphatic 13C nuclei in protein MAS NMR spectroscopy.

Authors:  Marvin J Bayro; Thorsten Maly; Neil R Birkett; Christopher M Dobson; Robert G Griffin
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

9.  Heteronuclear proton assisted recoupling.

Authors:  Gaël De Paëpe; Józef R Lewandowski; Antoine Loquet; Matt Eddy; Simon Megy; Anja Böckmann; Robert G Griffin
Journal:  J Chem Phys       Date:  2011-03-07       Impact factor: 3.488

10.  The on-fibrillation-pathway membrane content leakage and off-fibrillation-pathway lipid mixing induced by 40-residue β-amyloid peptides in biologically relevant model liposomes.

Authors:  Qinghui Cheng; Zhi-Wen Hu; Katelynne E Doherty; Yuto J Tobin-Miyaji; Wei Qiang
Journal:  Biochim Biophys Acta Biomembr       Date:  2018-03-13       Impact factor: 3.747

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