Literature DB >> 18287007

Peptide adsorption on a hydrophobic surface results from an interplay of solvation, surface, and intrapeptide forces.

D Horinek1, A Serr, M Geisler, T Pirzer, U Slotta, S Q Lud, J A Garrido, T Scheibel, T Hugel, R R Netz.   

Abstract

The hydrophobic effect, i.e., the poor solvation of nonpolar parts of molecules, plays a key role in protein folding and more generally for molecular self-assembly and aggregation in aqueous media. The perturbation of the water structure accounts for many aspects of protein hydrophobicity. However, to what extent the dispersion interaction between molecular entities themselves contributes has remained unclear. This is so because in peptide folding interactions and structural changes occur on all length scales and make disentangling various contributions impossible. We address this issue both experimentally and theoretically by looking at the force necessary to peel a mildly hydrophobic single peptide molecule from a flat hydrophobic diamond surface in the presence of water. This setup avoids problems caused by bubble adsorption, cavitation, and slow equilibration that complicate the much-studied geometry with two macroscopic surfaces. Using atomic-force spectroscopy, we determine the mean desorption force of a single spider-silk peptide chain as F = 58 +/- 8 pN, which corresponds to a desorption free energy of approximately 5 k(B)T per amino acid. Our all-atomistic molecular dynamics simulation including explicit water correspondingly yields the desorption force F = 54 +/- 15 pN. This observation demonstrates that standard nonpolarizable force fields used in classical simulations are capable of resolving the fine details of the hydrophobic attraction of peptides. The analysis of the involved energetics shows that water-structure effects and dispersive interactions give contributions of comparable magnitude that largely cancel out. It follows that the correct modeling of peptide hydrophobicity must take the intimate coupling of solvation and dispersive effects into account.

Entities:  

Mesh:

Substances:

Year:  2008        PMID: 18287007      PMCID: PMC2268547          DOI: 10.1073/pnas.0707879105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  10 in total

Review 1.  Interfaces and the driving force of hydrophobic assembly.

Authors:  David Chandler
Journal:  Nature       Date:  2005-09-29       Impact factor: 49.962

2.  Recent progress in understanding hydrophobic interactions.

Authors:  Emily E Meyer; Kenneth J Rosenberg; Jacob Israelachvili
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-05       Impact factor: 11.205

Review 3.  Single-molecule experiments in vitro and in silico.

Authors:  Marcos Sotomayor; Klaus Schulten
Journal:  Science       Date:  2007-05-25       Impact factor: 47.728

4.  The amphiphilic properties of spider silks are important for spinning.

Authors:  Josef H Exler; Daniel Hümmerich; Thomas Scheibel
Journal:  Angew Chem Int Ed Engl       Date:  2007       Impact factor: 15.336

5.  Detection and localization of individual antibody-antigen recognition events by atomic force microscopy.

Authors:  P Hinterdorfer; W Baumgartner; H J Gruber; K Schilcher; H Schindler
Journal:  Proc Natl Acad Sci U S A       Date:  1996-04-16       Impact factor: 11.205

6.  Adsorption thermodynamics of short-chain peptides on charged and uncharged nanothin polymer films.

Authors:  Nripen Singh; Scott M Husson
Journal:  Langmuir       Date:  2006-09-26       Impact factor: 3.882

7.  The ion sensitivity of surface conductive single crystalline diamond.

Authors:  Andreas Härtl; Jose A Garrido; Stefan Nowy; Ralf Zimmermann; Carsten Werner; Dominik Horinek; Roland Netz; Martin Stutzmann
Journal:  J Am Chem Soc       Date:  2007-02-07       Impact factor: 15.419

8.  Primary structure elements of spider dragline silks and their contribution to protein solubility.

Authors:  Daniel Huemmerich; Christopher W Helsen; Susanne Quedzuweit; Jan Oschmann; Rainer Rudolph; Thomas Scheibel
Journal:  Biochemistry       Date:  2004-10-26       Impact factor: 3.162

9.  Shear-induced unfolding triggers adhesion of von Willebrand factor fibers.

Authors:  S W Schneider; S Nuschele; A Wixforth; C Gorzelanny; A Alexander-Katz; R R Netz; M F Schneider
Journal:  Proc Natl Acad Sci U S A       Date:  2007-04-30       Impact factor: 11.205

10.  Hydration for a series of hydrocarbons.

Authors:  R D Mountain; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-21       Impact factor: 11.205

  10 in total
  17 in total

1.  Correlation between desorption force measured by atomic force microscopy and adsorption free energy measured by surface plasmon resonance spectroscopy for peptide-surface interactions.

Authors:  Yang Wei; Robert A Latour
Journal:  Langmuir       Date:  2010-11-12       Impact factor: 3.882

2.  How osmolytes influence hydrophobic polymer conformations: A unified view from experiment and theory.

Authors:  Jagannath Mondal; Duncan Halverson; Isaac T S Li; Guillaume Stirnemann; Gilbert C Walker; Bruce J Berne
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-13       Impact factor: 11.205

3.  Electrically controlled DNA adhesion.

Authors:  Matthias Erdmann; Ralf David; Ann Fornof; Hermann E Gaub
Journal:  Nat Nanotechnol       Date:  2009-12-20       Impact factor: 39.213

4.  Investigating single molecule adhesion by atomic force spectroscopy.

Authors:  Frank W S Stetter; Sandra Kienle; Stefanie Krysiak; Thorsten Hugel
Journal:  J Vis Exp       Date:  2015-02-27       Impact factor: 1.355

5.  Albumin (BSA) adsorption onto graphite stepped surfaces.

Authors:  Pamela Rubio-Pereda; J G Vilhena; Noboru Takeuchi; Pedro A Serena; Rubén Pérez
Journal:  J Chem Phys       Date:  2017-06-07       Impact factor: 3.488

6.  Interplay between adsorbed peptide structure, trapped water, and surface hydrophobicity.

Authors:  Katherine D Krause; Sandra Roy; Dennis K Hore
Journal:  Biointerphases       Date:  2017-05-15       Impact factor: 2.456

7.  Rate-dependent behavior of the amorphous phase of spider dragline silk.

Authors:  Sandeep P Patil; Bernd Markert; Frauke Gräter
Journal:  Biophys J       Date:  2014-06-03       Impact factor: 4.033

8.  Determination of peptide-surface adsorption free energy for material surfaces not conducive to SPR or QCM using AFM.

Authors:  Aby A Thyparambil; Yang Wei; Robert A Latour
Journal:  Langmuir       Date:  2012-03-20       Impact factor: 3.882

9.  Nanomechanical properties of steric zipper globular structures.

Authors:  Neta Lester-Zer; Mnar Ghrayeb; Liraz Chai
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-21       Impact factor: 11.205

10.  Tensile mechanics of alanine-based helical polypeptide: force spectroscopy versus computer simulations.

Authors:  Rehana Afrin; Ichiro Takahashi; Kazuki Shiga; Atsushi Ikai
Journal:  Biophys J       Date:  2009-02       Impact factor: 4.033

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.