Literature DB >> 28595417

Albumin (BSA) adsorption onto graphite stepped surfaces.

Pamela Rubio-Pereda1, J G Vilhena1, Noboru Takeuchi2, Pedro A Serena1, Rubén Pérez3.   

Abstract

Nanomaterials are good candidates for the design of novel components with biomedical applications. For example, nano-patterned substrates may be used to immobilize protein molecules in order to integrate them in biosensing units. Here, we perform long MD simulations (up to 200 ns) using an explicit solvent and physiological ion concentrations to characterize the adsorption of bovine serum albumin (BSA) onto a nano-patterned graphite substrate. We have studied the effect of the orientation and step size on the protein adsorption and final conformation. Our results show that the protein is stable, with small changes in the protein secondary structure that are confined to the contact area and reveal the influence of nano-structuring on the spontaneous adsorption, protein-surface binding energies, and protein mobility. Although van der Waals (vdW) interactions play a dominant role, our simulations reveal the important role played by the hydrophobic lipid-binding sites of the BSA molecule in the adsorption process. The complex structure of these sites, that incorporate residues with different hydrophobic character, and their flexibility are crucial to understand the influence of the ion concentration and protein orientation in the different steps of the adsorption process. Our study provides useful information for the molecular engineering of components that require the immobilization of biomolecules and the preservation of their biological activity.

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Year:  2017        PMID: 28595417      PMCID: PMC5457296          DOI: 10.1063/1.4984037

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  62 in total

1.  The Protein Data Bank.

Authors:  H M Berman; J Westbrook; Z Feng; G Gilliland; T N Bhat; H Weissig; I N Shindyalov; P E Bourne
Journal:  Nucleic Acids Res       Date:  2000-01-01       Impact factor: 16.971

2.  Development and testing of a general amber force field.

Authors:  Junmei Wang; Romain M Wolf; James W Caldwell; Peter A Kollman; David A Case
Journal:  J Comput Chem       Date:  2004-07-15       Impact factor: 3.376

3.  Interpretation of protein adsorption: surface-induced conformational changes.

Authors:  Paul Roach; David Farrar; Carole C Perry
Journal:  J Am Chem Soc       Date:  2005-06-08       Impact factor: 15.419

4.  Peptide adsorption on a hydrophobic surface results from an interplay of solvation, surface, and intrapeptide forces.

Authors:  D Horinek; A Serr; M Geisler; T Pirzer; U Slotta; S Q Lud; J A Garrido; T Scheibel; T Hugel; R R Netz
Journal:  Proc Natl Acad Sci U S A       Date:  2008-02-20       Impact factor: 11.205

Review 5.  Understanding the performance of biomaterials through molecular modeling: crossing the bridge between their intrinsic properties and the surface adsorption of proteins.

Authors:  Giuseppina Raffaini; Fabio Ganazzoli
Journal:  Macromol Biosci       Date:  2007-05-10       Impact factor: 4.979

Review 6.  Biomedical applications of diamond-like carbon coatings: a review.

Authors:  Ritwik Kumar Roy; Kwang-Ryeol Lee
Journal:  J Biomed Mater Res B Appl Biomater       Date:  2007-10       Impact factor: 3.368

7.  Interaction of bovine (BSA) and human (HSA) serum albumins with ionic surfactants: spectroscopy and modelling.

Authors:  E L Gelamo; C H T P Silva; H Imasato; M Tabak
Journal:  Biochim Biophys Acta       Date:  2002-01-31

Review 8.  Computer simulation of polypeptide adsorption on model biomaterials.

Authors:  Fabio Ganazzoli; Giuseppina Raffaini
Journal:  Phys Chem Chem Phys       Date:  2005-08-24       Impact factor: 3.676

9.  The fluorescent probe prodan characterizes the warfarin binding site on human serum albumin.

Authors:  F Moreno; M Cortijo; J González-Jiménez
Journal:  Photochem Photobiol       Date:  1999-01       Impact factor: 3.421

10.  H++: a server for estimating pKas and adding missing hydrogens to macromolecules.

Authors:  John C Gordon; Jonathan B Myers; Timothy Folta; Valia Shoja; Lenwood S Heath; Alexey Onufriev
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

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  2 in total

1.  Tuning Structure and Dynamics of Blue Copper Azurin Junctions via Single Amino-Acid Mutations.

Authors:  Maria Ortega; J G Vilhena; Linda A Zotti; Ismael Díez-Pérez; Juan Carlos Cuevas; Rubén Pérez
Journal:  Biomolecules       Date:  2019-10-15

2.  Tuning protein adsorption on graphene surfaces via laser-induced oxidation.

Authors:  Efstratios D Sitsanidis; Johanna Schirmer; Aku Lampinen; Kamila K Mentel; Vesa-Matti Hiltunen; Visa Ruokolainen; Andreas Johansson; Pasi Myllyperkiö; Maija Nissinen; Mika Pettersson
Journal:  Nanoscale Adv       Date:  2021-02-22
  2 in total

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