Literature DB >> 18282519

Three-dimensional organization of gene expression in erythroid cells.

Wouter de Laat1, Petra Klous, Jurgen Kooren, Daan Noordermeer, Robert-Jan Palstra, Marieke Simonis, Erik Splinter, Frank Grosveld.   

Abstract

The history of globin research is marked by a series of contributions seminal to our understanding of the genome, its function, and its relation to disease. For example, based on studies on hemoglobinopathies, it was understood that gene expression can be under the control of DNA elements that locate away from the genes on the linear chromosome template. Recent technological developments have allowed the demonstration that these regulatory DNA elements communicate with the genes through physical interaction, which loops out the intervening chromatin fiber. Subsequent studies showed that the spatial organization of the beta-globin locus dynamically changes in relation to differences in gene expression. Moreover, it was shown that the beta-globin locus adopts a different position in the nucleus during development and erythroid maturation. Here, we discuss the most recent insight into the three-dimensional organization of gene expression.

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Year:  2008        PMID: 18282519     DOI: 10.1016/S0070-2153(07)00005-1

Source DB:  PubMed          Journal:  Curr Top Dev Biol        ISSN: 0070-2153            Impact factor:   4.897


  35 in total

1.  Internucleosomal interactions mediated by histone tails allow distant communication in chromatin.

Authors:  Olga I Kulaeva; Guohui Zheng; Yury S Polikanov; Andrew V Colasanti; Nicolas Clauvelin; Swagatam Mukhopadhyay; Anirvan M Sengupta; Vasily M Studitsky; Wilma K Olson
Journal:  J Biol Chem       Date:  2012-04-19       Impact factor: 5.157

2.  Hypermethylation of the gene LARP2 for noninvasive prenatal diagnosis of β-thalassemia based on DNA methylation profile.

Authors:  Tian Gao; Yanli Nie; Jianxin Guo
Journal:  Mol Biol Rep       Date:  2012-02-11       Impact factor: 2.316

3.  Memories of lost enhancers.

Authors:  Ranjan Sen; Rudolf Grosschedl
Journal:  Genes Dev       Date:  2010-05-15       Impact factor: 11.361

4.  Acetylation of EKLF is essential for epigenetic modification and transcriptional activation of the beta-globin locus.

Authors:  Tanushri Sengupta; Ken Chen; Eric Milot; James J Bieker
Journal:  Mol Cell Biol       Date:  2008-08-18       Impact factor: 4.272

Review 5.  How cohesin and CTCF cooperate in regulating gene expression.

Authors:  Kerstin S Wendt; Jan-Michael Peters
Journal:  Chromosome Res       Date:  2009-03-24       Impact factor: 5.239

Review 6.  Chromatin domains in higher eukaryotes: insights from genome-wide mapping studies.

Authors:  Elzo de Wit; Bas van Steensel
Journal:  Chromosoma       Date:  2008-10-14       Impact factor: 4.316

Review 7.  Hemoglobin research and the origins of molecular medicine.

Authors:  Alan N Schechter
Journal:  Blood       Date:  2008-11-15       Impact factor: 22.113

Review 8.  Functional and mechanistic diversity of distal transcription enhancers.

Authors:  Michael Bulger; Mark Groudine
Journal:  Cell       Date:  2011-02-04       Impact factor: 41.582

9.  RUNX1 represses the erythroid gene expression program during megakaryocytic differentiation.

Authors:  Olga N Kuvardina; Julia Herglotz; Stephan Kolodziej; Nicole Kohrs; Stefanie Herkt; Bartosch Wojcik; Thomas Oellerich; Jasmin Corso; Kira Behrens; Ashok Kumar; Helge Hussong; Henning Urlaub; Joachim Koch; Hubert Serve; Halvard Bonig; Carol Stocking; Michael A Rieger; Jörn Lausen
Journal:  Blood       Date:  2015-04-24       Impact factor: 22.113

10.  TMEM8 - a non-globin gene entrapped in the globin web.

Authors:  Elena S Philonenko; Denis B Klochkov; Victoria V Borunova; Alexey A Gavrilov; Sergey V Razin; Olga V Iarovaia
Journal:  Nucleic Acids Res       Date:  2009-12       Impact factor: 16.971

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