Literature DB >> 19308701

How cohesin and CTCF cooperate in regulating gene expression.

Kerstin S Wendt1, Jan-Michael Peters.   

Abstract

Cohesin is a DNA-binding protein complex that is essential for sister chromatid cohesion and facilitates the repair of damaged DNA. In addition, cohesin has important roles in regulating gene expression, but the molecular mechanisms of this function are poorly understood. Recent experiments have revealed that cohesin binds to the same sites in mammalian genomes as the zinc finger transcription factor CTCF. At a few loci CTCF has been shown to function as an enhancer-blocking transcriptional insulator, and recent observations indicate that this function depends on cohesin. Here we review what is known about the roles of cohesin and CTCF in regulating gene expression in mammalian cells, and we discuss how cohesin might mediate the insulator function of CTCF.

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Year:  2009        PMID: 19308701     DOI: 10.1007/s10577-008-9017-7

Source DB:  PubMed          Journal:  Chromosome Res        ISSN: 0967-3849            Impact factor:   5.239


  97 in total

1.  Cleavage of cohesin by the CD clan protease separin triggers anaphase in yeast.

Authors:  F Uhlmann; D Wernic; M A Poupart; E V Koonin; K Nasmyth
Journal:  Cell       Date:  2000-10-27       Impact factor: 41.582

2.  Human Wapl is a cohesin-binding protein that promotes sister-chromatid resolution in mitotic prophase.

Authors:  Rita Gandhi; Peter J Gillespie; Tatsuya Hirano
Journal:  Curr Biol       Date:  2006-11-16       Impact factor: 10.834

3.  Functional contribution of Pds5 to cohesin-mediated cohesion in human cells and Xenopus egg extracts.

Authors:  Ana Losada; Tomoki Yokochi; Tatsuya Hirano
Journal:  J Cell Sci       Date:  2005-04-26       Impact factor: 5.285

4.  CTCF-dependent chromatin insulator is linked to epigenetic remodeling.

Authors:  Ko Ishihara; Mitsuo Oshimura; Mitsuyoshi Nakao
Journal:  Mol Cell       Date:  2006-09-01       Impact factor: 17.970

Review 5.  Fork it over: the cohesion establishment factor Ctf7p and DNA replication.

Authors:  Robert V Skibbens; Marie Maradeo; Laura Eastman
Journal:  J Cell Sci       Date:  2007-08-01       Impact factor: 5.285

6.  Effects of sister chromatid cohesion proteins on cut gene expression during wing development in Drosophila.

Authors:  Dale Dorsett; Joel C Eissenberg; Ziva Misulovin; Andrew Martens; Bethany Redding; Kim McKim
Journal:  Development       Date:  2005-10-05       Impact factor: 6.868

7.  Beta-globin gene switching and DNase I sensitivity of the endogenous beta-globin locus in mice do not require the locus control region.

Authors:  M A Bender; M Bulger; J Close; M Groudine
Journal:  Mol Cell       Date:  2000-02       Impact factor: 17.970

8.  Cohesin relocation from sites of chromosomal loading to places of convergent transcription.

Authors:  Armelle Lengronne; Yuki Katou; Saori Mori; Shihori Yokobayashi; Gavin P Kelly; Takehiko Itoh; Yoshinori Watanabe; Katsuhiko Shirahige; Frank Uhlmann
Journal:  Nature       Date:  2004-06-30       Impact factor: 49.962

9.  NIPBL, encoding a homolog of fungal Scc2-type sister chromatid cohesion proteins and fly Nipped-B, is mutated in Cornelia de Lange syndrome.

Authors:  Emma T Tonkin; Tzu-Jou Wang; Steven Lisgo; Michael J Bamshad; Tom Strachan
Journal:  Nat Genet       Date:  2004-05-16       Impact factor: 38.330

10.  Three-dimensional conformation at the H19/Igf2 locus supports a model of enhancer tracking.

Authors:  Nora Engel; Anjali K Raval; Joanne L Thorvaldsen; S Marisa Bartolomei
Journal:  Hum Mol Genet       Date:  2008-07-10       Impact factor: 6.150

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  62 in total

Review 1.  Enhancer and promoter interactions-long distance calls.

Authors:  Ivan Krivega; Ann Dean
Journal:  Curr Opin Genet Dev       Date:  2011-12-12       Impact factor: 5.578

2.  Dynamic nature of transcriptional regulation of nuclear receptor target genes in the context of chromatin organization.

Authors:  Sami Väisänen; Juha Matilainen; Carsten Carlberg
Journal:  Dermatoendocrinol       Date:  2011-07-01

Review 3.  Condensin and cohesin complexity: the expanding repertoire of functions.

Authors:  Andrew J Wood; Aaron F Severson; Barbara J Meyer
Journal:  Nat Rev Genet       Date:  2010-05-05       Impact factor: 53.242

4.  Prediction of human protein-protein interaction by a mixed Bayesian model and its application to exploring underlying cancer-related pathway crosstalk.

Authors:  Yan Xu; Wen Hu; Zhiqiang Chang; Huizi Duanmu; Shanzhen Zhang; Zhenqi Li; Zihui Li; Lili Yu; Xia Li
Journal:  J R Soc Interface       Date:  2010-10-13       Impact factor: 4.118

5.  The cohesin complex is required for the DNA damage-induced G2/M checkpoint in mammalian cells.

Authors:  Erwan Watrin; Jan-Michael Peters
Journal:  EMBO J       Date:  2009-07-23       Impact factor: 11.598

6.  DNA-dependent cohesin cleavage by separase.

Authors:  Martin Kucej; Hui Zou
Journal:  Nucleus       Date:  2010 Jan-Feb       Impact factor: 4.197

7.  The intellectual disability of trisomy 21: differences in gene expression in a case series of patients with lower and higher IQ.

Authors:  André Mégarbané; Florian Noguier; Samantha Stora; Laurent Manchon; Clotilde Mircher; Roman Bruno; Nathalie Dorison; Fabien Pierrat; Marie-Odile Rethoré; Bernadette Trentin; Aimé Ravel; Marine Morent; Gerard Lefranc; David Piquemal
Journal:  Eur J Hum Genet       Date:  2013-02-20       Impact factor: 4.246

8.  Cohesin is required for higher-order chromatin conformation at the imprinted IGF2-H19 locus.

Authors:  Raffaella Nativio; Kerstin S Wendt; Yoko Ito; Joanna E Huddleston; Santiago Uribe-Lewis; Kathryn Woodfine; Christel Krueger; Wolf Reik; Jan-Michael Peters; Adele Murrell
Journal:  PLoS Genet       Date:  2009-11-26       Impact factor: 5.917

Review 9.  Insulators as mediators of intra- and inter-chromosomal interactions: a common evolutionary theme.

Authors:  Chin-Tong Ong; Victor G Corces
Journal:  J Biol       Date:  2009-08-27

10.  Epigenetic silencing in Friedreich ataxia is associated with depletion of CTCF (CCCTC-binding factor) and antisense transcription.

Authors:  Irene De Biase; Yogesh K Chutake; Paul M Rindler; Sanjay I Bidichandani
Journal:  PLoS One       Date:  2009-11-19       Impact factor: 3.240

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