Literature DB >> 18275915

The application of FAST-NMR for the identification of novel drug discovery targets.

Robert Powers1, Kelly A Mercier, Jennifer C Copeland.   

Abstract

The continued success of genome sequencing projects has resulted in a wealth of information, but 40-50% of identified genes correspond to hypothetical proteins or proteins of unknown function. The functional annotation screening technology by NMR (FAST-NMR) screen was developed to assign a biological function for these unannotated proteins with a structure solved by the protein structure initiative. FAST-NMR is based on the premise that a biological function can be described by a similarity in binding sites and ligand interactions with proteins of known function. The resulting co-structure and functional assignment may provide a starting point for a drug discovery effort.

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Year:  2008        PMID: 18275915      PMCID: PMC2754198          DOI: 10.1016/j.drudis.2007.11.001

Source DB:  PubMed          Journal:  Drug Discov Today        ISSN: 1359-6446            Impact factor:   7.851


  64 in total

1.  Crystal structure of the human ATP-dependent splicing and export factor UAP56.

Authors:  Hang Shi; Olivier Cordin; C Michael Minder; Patrick Linder; Rui-Ming Xu
Journal:  Proc Natl Acad Sci U S A       Date:  2004-12-07       Impact factor: 11.205

2.  First structural glimpse at a bacterial Ser/Thr protein phosphatase.

Authors:  Pedro M Alzari
Journal:  Structure       Date:  2004-11       Impact factor: 5.006

Review 3.  The Ras superfamily at a glance.

Authors:  Krister Wennerberg; Kent L Rossman; Channing J Der
Journal:  J Cell Sci       Date:  2005-03-01       Impact factor: 5.285

4.  Guidelines for the prevention of antimicrobial resistance in hospitals.

Authors:  S Natsch; M E van Kasteren; B J Kullberg; J W van der Meer
Journal:  Clin Infect Dis       Date:  1998-06       Impact factor: 9.079

Review 5.  Fancy meeting you here! A fresh look at "prokaryotic" protein phosphorylation.

Authors:  P J Kennelly; M Potts
Journal:  J Bacteriol       Date:  1996-08       Impact factor: 3.490

6.  Prediction of protein secondary structure and active sites using the alignment of homologous sequences.

Authors:  M J Zvelebil; G J Barton; W R Taylor; M J Sternberg
Journal:  J Mol Biol       Date:  1987-06-20       Impact factor: 5.469

7.  Protein sequence alignments: a strategy for the hierarchical analysis of residue conservation.

Authors:  C D Livingstone; G J Barton
Journal:  Comput Appl Biosci       Date:  1993-12

8.  Genome-scale gene function prediction using multiple sources of high-throughput data in yeast Saccharomyces cerevisiae.

Authors:  Trupti Joshi; Yu Chen; Jeffrey M Becker; Nickolai Alexandrov; Dong Xu
Journal:  OMICS       Date:  2004

Review 9.  The use of 2H, 13C, 15N multidimensional NMR to study the structure and dynamics of proteins.

Authors:  K H Gardner; L E Kay
Journal:  Annu Rev Biophys Biomol Struct       Date:  1998

Review 10.  Structure and function of SH2 domains.

Authors:  L E Marengere; T Pawson
Journal:  J Cell Sci Suppl       Date:  1994
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  16 in total

1.  Advances in Nuclear Magnetic Resonance for Drug Discovery.

Authors:  Robert Powers
Journal:  Expert Opin Drug Discov       Date:  2009-10-01       Impact factor: 6.098

Review 2.  Application of NMR and molecular docking in structure-based drug discovery.

Authors:  Jaime L Stark; Robert Powers
Journal:  Top Curr Chem       Date:  2012

3.  NMR Metabolomics Protocols for Drug Discovery.

Authors:  Fatema Bhinderwala; Robert Powers
Journal:  Methods Mol Biol       Date:  2019

4.  Solution structure and function of YndB, an AHSA1 protein from Bacillus subtilis.

Authors:  Jaime L Stark; Kelly A Mercier; Geoffrey A Mueller; Thomas B Acton; Rong Xiao; Gaetano T Montelione; Robert Powers
Journal:  Proteins       Date:  2010-12

5.  Correlation between protein function and ligand binding profiles.

Authors:  Matthew D Shortridge; Michael Bokemper; Jennifer C Copeland; Jaime L Stark; Robert Powers
Journal:  J Proteome Res       Date:  2011-03-22       Impact factor: 4.466

6.  Research in bioanalysis and separations at the University of Nebraska - Lincoln.

Authors:  David S Hage; Eric D Dodds; Liangcheng Du; Robert Powers
Journal:  Bioanalysis       Date:  2011-05       Impact factor: 2.681

7.  Statistical removal of background signals from high-throughput (1)H NMR line-broadening ligand-affinity screens.

Authors:  Bradley Worley; Nicholas J Sisco; Robert Powers
Journal:  J Biomol NMR       Date:  2015-07-09       Impact factor: 2.835

8.  PROFESS: a PROtein function, evolution, structure and sequence database.

Authors:  Thomas Triplet; Matthew D Shortridge; Mark A Griep; Jaime L Stark; Robert Powers; Peter Revesz
Journal:  Database (Oxford)       Date:  2010-07-06       Impact factor: 3.451

9.  Structure and function of Pseudomonas aeruginosa protein PA1324 (21-170).

Authors:  Kelly A Mercier; John R Cort; Michael A Kennedy; Erin E Lockert; Shuisong Ni; Matthew D Shortridge; Robert Powers
Journal:  Protein Sci       Date:  2009-03       Impact factor: 6.725

10.  Structural and functional similarity between the bacterial type III secretion system needle protein PrgI and the eukaryotic apoptosis Bcl-2 proteins.

Authors:  Matthew D Shortridge; Robert Powers
Journal:  PLoS One       Date:  2009-10-13       Impact factor: 3.240

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