Literature DB >> 18231983

Overview of DNA sequencing strategies.

Jay A Shendure1, Gregory J Porreca, George M Church.   

Abstract

Efficient and cost-effective DNA sequencing technologies have been, and may continue to be, critical to the progress of molecular biology. This overview of DNA sequencing strategies provides a high-level review of six distinct approaches to DNA sequencing: (a) dideoxy sequencing; (b) cyclic array sequencing; (c) sequencing-by-hybridization; (d) microelectrophoresis; (e) mass spectrometry; and (f) nanopore sequencing. The primary focus is on dideoxy sequencing, which has been the dominant technology since 1977, and on cyclic array strategies, for which several competitive implementations have been developed since 2005. Because the field of DNA sequencing is changing rapidly, this unit represents a snapshot of this particular moment. (c) 2008 by John Wiley & Sons, Inc.

Mesh:

Year:  2008        PMID: 18231983     DOI: 10.1002/0471142727.mb0701s81

Source DB:  PubMed          Journal:  Curr Protoc Mol Biol        ISSN: 1934-3647


  16 in total

Review 1.  Methods in DNA methylation profiling.

Authors:  Tao Zuo; Benjamin Tycko; Ta-Ming Liu; Juey-Jen L Lin; Tim H-M Huang
Journal:  Epigenomics       Date:  2009-12       Impact factor: 4.778

Review 2.  Application of mass spectrometry to molecular diagnostics of viral infections.

Authors:  Lilia M Ganova-Raeva; Yury E Khudyakov
Journal:  Expert Rev Mol Diagn       Date:  2013-05       Impact factor: 5.225

3.  Effect of PCR extension temperature on high-throughput sequencing.

Authors:  María José López-Barragán; Mariam Quiñones; Kairong Cui; Jacob Lemieux; Keji Zhao; Xin-Zhuan Su
Journal:  Mol Biochem Parasitol       Date:  2010-11-26       Impact factor: 1.759

4.  Fluorescent structural DNA nanoballs functionalized with phosphate-linked nucleotide triphosphates.

Authors:  Jon P Anderson; Bambi L Reynolds; Kristin Baum; John G Williams
Journal:  Nano Lett       Date:  2010-03-10       Impact factor: 11.189

5.  Kinetoplastid genomics: the thin end of the wedge.

Authors:  Nancy R Sturm; L L Isadora Trejo Martinez; Sean Thomas
Journal:  Infect Genet Evol       Date:  2008-07-15       Impact factor: 3.342

Review 6.  Genome-wide association studies for atherosclerotic vascular disease and its risk factors.

Authors:  Keyue Ding; Iftikhar J Kullo
Journal:  Circ Cardiovasc Genet       Date:  2009-02

Review 7.  Our changing view of the genomic landscape of cancer.

Authors:  Daphne W Bell
Journal:  J Pathol       Date:  2010-01       Impact factor: 7.996

Review 8.  Synthetic viruses: a new opportunity to understand and prevent viral disease.

Authors:  Eckard Wimmer; Steffen Mueller; Terrence M Tumpey; Jeffery K Taubenberger
Journal:  Nat Biotechnol       Date:  2009-12       Impact factor: 54.908

9.  3'-end sequencing for expression quantification (3SEQ) from archival tumor samples.

Authors:  Andrew H Beck; Ziming Weng; Daniela M Witten; Shirley Zhu; Joseph W Foley; Phil Lacroute; Cheryl L Smith; Robert Tibshirani; Matt van de Rijn; Arend Sidow; Robert B West
Journal:  PLoS One       Date:  2010-01-19       Impact factor: 3.240

10.  SNP Discovery through Next-Generation Sequencing and Its Applications.

Authors:  Santosh Kumar; Travis W Banks; Sylvie Cloutier
Journal:  Int J Plant Genomics       Date:  2012-11-22
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