Literature DB >> 23638820

Application of mass spectrometry to molecular diagnostics of viral infections.

Lilia M Ganova-Raeva1, Yury E Khudyakov.   

Abstract

Mass spectrometry (MS) has found numerous applications in life sciences. It has high accuracy, sensitivity and wide dynamic range in addition to medium- to high-throughput capabilities. These features make MS a superior platform for analysis of various biomolecules including proteins, lipids, nucleic acids and carbohydrates. Until recently, MS was applied for protein detection and characterization. During the last decade, however, MS has successfully been used for molecular diagnostics of microbial and viral infections with the most notable applications being identification of pathogens, genomic sequencing, mutation detection, DNA methylation analysis, tracking of transmissions, and characterization of genetic heterogeneity. These new developments vastly expand the MS application from experimental research to public health and clinical fields. Matching of molecular techniques with specific requirements of the major MS platforms has produced powerful technologies for molecular diagnostics, which will further benefit from coupling with computational tools for extracting clinical information from MS-derived data.

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Year:  2013        PMID: 23638820      PMCID: PMC5831079          DOI: 10.1586/erm.13.24

Source DB:  PubMed          Journal:  Expert Rev Mol Diagn        ISSN: 1473-7159            Impact factor:   5.225


  84 in total

1.  Automated genotyping using the DNA MassArray technology.

Authors:  Christian Jurinke; Dirk van den Boom; Charles R Cantor; Hubert Köster
Journal:  Methods Mol Biol       Date:  2002

2.  Mining disease susceptibility genes through SNP analyses and expression profiling using MALDI-TOF mass spectrometry.

Authors:  Kai Tang; Paul Oeth; Stefan Kammerer; Mikhail F Denissenko; Jonas Ekblom; Christian Jurinke; Dirk van den Boom; Andreas Braun; Charles R Cantor
Journal:  J Proteome Res       Date:  2004 Mar-Apr       Impact factor: 4.466

3.  Polymerase chain reaction and immunoassay--matrix assisted laser desorption mass spectrometry using tag-mass technology: new tools to break down quantification limits and multiplexes.

Authors:  J Stauber; M El Ayed; M Wisztorski; R Day; I Fournier; M Salzet
Journal:  Anal Chem       Date:  2009-11-15       Impact factor: 6.986

4.  Analysis of enzymatic DNA sequencing reactions by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.

Authors:  T A Shaler; Y Tan; J N Wickham; K J Wu; C H Becker
Journal:  Rapid Commun Mass Spectrom       Date:  1995       Impact factor: 2.419

Review 5.  Use of matrix-assisted laser desorption/ionization time-of-flight mass spectrometry for multiplex genotyping.

Authors:  Klaus Meyer; Per Magne Ueland
Journal:  Adv Clin Chem       Date:  2011       Impact factor: 5.394

6.  Characterization of hepatitis C virus quasispecies by matrix-assisted laser desorption ionization-time of flight (mass spectrometry) mutation detection.

Authors:  Melissa Ayers; Karen Siu; Eve Roberts; Alex M Garvin; Raymond Tellier
Journal:  J Clin Microbiol       Date:  2002-09       Impact factor: 5.948

7.  Detection of hepatitis B virus YMDD variants using mass spectrometric analysis of oligonucleotide fragments.

Authors:  Sun Pyo Hong; Nam Keun Kim; Seong Gyu Hwang; Hyun Jae Chung; Sukjoon Kim; Jin Hee Han; Hyung Tae Kim; Kyu Sung Rim; Myung Seo Kang; Wangdon Yoo; Soo-Ok Kim
Journal:  J Hepatol       Date:  2004-05       Impact factor: 25.083

8.  Automated comparative sequence analysis by base-specific cleavage and mass spectrometry for nucleic acid-based microbial typing.

Authors:  Christiane Honisch; Yong Chen; Chloe Mortimer; Catherine Arnold; Oliver Schmidt; Dirk van den Boom; Charles R Cantor; Haroun N Shah; Saheer E Gharbia
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-11       Impact factor: 11.205

9.  High-resolution human papillomavirus genotyping by MALDI-TOF mass spectrometry.

Authors:  Sun Pyo Hong; Soo-Kyung Shin; Eun Hee Lee; Eun Ok Kim; Seung Il Ji; Hyun Jae Chung; Sun Nie Park; Wangdon Yoo; William R Folk; Soo-Ok Kim
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

10.  Multiplex MassTag-PCR for respiratory pathogens in pediatric nasopharyngeal washes negative by conventional diagnostic testing shows a high prevalence of viruses belonging to a newly recognized rhinovirus clade.

Authors:  Samuel R Dominguez; Thomas Briese; Gustavo Palacios; Jeffrey Hui; Joseph Villari; Vishal Kapoor; Rafal Tokarz; Mary P Glodé; Marsha S Anderson; Christine C Robinson; Kathryn V Holmes; W Ian Lipkin
Journal:  J Clin Virol       Date:  2008-10       Impact factor: 3.168

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  8 in total

1.  Laser-assisted rapid evaporative ionisation mass spectrometry (LA-REIMS) as a metabolomics platform in cervical cancer screening.

Authors:  Maria Paraskevaidi; Simon J S Cameron; Eilbhe Whelan; Sarah Bowden; Menelaos Tzafetas; Anita Mitra; Anita Semertzidou; Antonis Athanasiou; Phillip R Bennett; David A MacIntyre; Zoltan Takats; Maria Kyrgiou
Journal:  EBioMedicine       Date:  2020-09-25       Impact factor: 8.143

2.  Transparency of reporting in molecular diagnostics.

Authors:  Stephen Bustin
Journal:  Int J Mol Sci       Date:  2013-07-30       Impact factor: 5.923

3.  Identification of Microorganisms by High Resolution Tandem Mass Spectrometry with Accurate Statistical Significance.

Authors:  Gelio Alves; Guanghui Wang; Aleksey Y Ogurtsov; Steven K Drake; Marjan Gucek; Anthony F Suffredini; David B Sacks; Yi-Kuo Yu
Journal:  J Am Soc Mass Spectrom       Date:  2015-10-28       Impact factor: 3.109

Review 4.  Mass spectrometry analytical responses to the SARS-CoV2 coronavirus in review.

Authors:  Justin H Griffin; Kevin M Downard
Journal:  Trends Analyt Chem       Date:  2021-05-11       Impact factor: 12.296

Review 5.  Mass spectrometry applied to diagnosis, prognosis, and therapeutic targets identification for the novel coronavirus SARS-CoV-2: A review.

Authors:  Nerilson M Lima; Bruno L M Fernandes; Guilherme F Alves; Jéssica C Q de Souza; Marcelo M Siqueira; Maria Patrícia do Nascimento; Olívia B O Moreira; Alessandra Sussulini; Marcone A L de Oliveira
Journal:  Anal Chim Acta       Date:  2021-12-20       Impact factor: 6.558

Review 6.  Recent advancements in the measurement of pathogenic airborne viruses.

Authors:  Jyoti Bhardwaj; Seongkyeol Hong; Junbeom Jang; Chang-Ho Han; Jaegil Lee; Jaesung Jang
Journal:  J Hazard Mater       Date:  2021-07-05       Impact factor: 10.588

7.  Quantitative Mass Spectrometric Analysis of Autoantibodies as a Paradigm Shift in Autoimmune Serology.

Authors:  Adrian Y S Lee; Tim Chataway; Alex D Colella; Tom P Gordon; Jing J Wang
Journal:  Front Immunol       Date:  2019-12-04       Impact factor: 7.561

Review 8.  Laboratory diagnosis of COVID-19 in China: A review of challenging cases and analysis.

Authors:  Ran Jing; Timothy Kudinha; Meng-Lan Zhou; Meng Xiao; He Wang; Wen-Hang Yang; Ying-Chun Xu; Po-Ren Hsueh
Journal:  J Microbiol Immunol Infect       Date:  2020-10-17       Impact factor: 4.399

  8 in total

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