Literature DB >> 18675383

Kinetoplastid genomics: the thin end of the wedge.

Nancy R Sturm1, L L Isadora Trejo Martinez, Sean Thomas.   

Abstract

The completion of the genome sequencing projects for major pathogens Trypanosoma brucei, Trypanosoma cruzi and Leishmania major has enabled numerous studies that would have been difficult or impossible to perform otherwise. New technologies in sequencing and protein analyses promise further rapid expansion in our capabilities. The keys to successful use of these new tools are recognizing the power and limitations of studies performed thus far, grasping the unrealized potential of new and developing technologies, and creating access to a multidisciplinary set of skills that will facilitate research, particularly in the bioinformatic analysis of the reams of data that will be forthcoming. In this Discussion, we will provide an overview of kinetoplastid genomics studies with emphasis on studies advanced through genomic data, and a preview of what may come in the near future.

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Year:  2008        PMID: 18675383      PMCID: PMC2676795          DOI: 10.1016/j.meegid.2008.07.001

Source DB:  PubMed          Journal:  Infect Genet Evol        ISSN: 1567-1348            Impact factor:   3.342


  63 in total

1.  Discovery and barcoding by analysis of spliced leader RNA gene sequences of new isolates of Trypanosomatidae from Heteroptera in Costa Rica and Ecuador.

Authors:  Dmitri A Maslov; Scott J Westenberger; Xing Xu; David A Campbell; Nancy R Sturm
Journal:  J Eukaryot Microbiol       Date:  2007 Jan-Feb       Impact factor: 3.346

2.  Analysis of the Leishmania donovani transcriptome reveals an ordered progression of transient and permanent changes in gene expression during differentiation.

Authors:  A Saxena; T Lahav; N Holland; G Aggarwal; A Anupama; Y Huang; H Volpin; P J Myler; D Zilberstein
Journal:  Mol Biochem Parasitol       Date:  2006-12-12       Impact factor: 1.759

3.  A proteomics screen implicates HSP83 and a small kinetoplastid calpain-related protein in drug resistance in Leishmania donovani clinical field isolates by modulating drug-induced programmed cell death.

Authors:  Baptiste Vergnes; Benjamin Gourbal; Isabelle Girard; Shyam Sundar; Jolyne Drummelsmith; Marc Ouellette
Journal:  Mol Cell Proteomics       Date:  2006-10-17       Impact factor: 5.911

4.  Genomic and proteomic expression analysis of Leishmania promastigote and amastigote life stages: the Leishmania genome is constitutively expressed.

Authors:  Kirk Leifso; Gabriela Cohen-Freue; Nisha Dogra; Angus Murray; W Robert McMaster
Journal:  Mol Biochem Parasitol       Date:  2006-12-08       Impact factor: 1.759

5.  Biochemical characterization of Trypanosoma brucei RNA polymerase II.

Authors:  Anish Das; Hong Li; Tong Liu; Vivian Bellofatto
Journal:  Mol Biochem Parasitol       Date:  2006-08-28       Impact factor: 1.759

6.  Chromosome-wide analysis of gene function by RNA interference in the african trypanosome.

Authors:  Chandra Subramaniam; Paul Veazey; Seth Redmond; Jamie Hayes-Sinclair; Emma Chambers; Mark Carrington; Keith Gull; Keith Matthews; David Horn; Mark C Field
Journal:  Eukaryot Cell       Date:  2006-09

7.  KISS: the kinetoplastid RNA editing sequence search tool.

Authors:  Torsten Ochsenreiter; Michael Cipriano; Stephen L Hajduk
Journal:  RNA       Date:  2006-11-22       Impact factor: 4.942

8.  Compared genomics of the strand switch region of Leishmania chromosome 1 reveal a novel genus-specific gene and conserved structural features and sequence motifs.

Authors:  Jacques Puechberty; Christine Blaineau; Sabrina Meghamla; Lucien Crobu; Michel Pagès; Patrick Bastien
Journal:  BMC Genomics       Date:  2007-02-24       Impact factor: 3.969

9.  Mapping the antigenicity of the parasites in Leishmania donovani infection by proteome serology.

Authors:  Michael Forgber; Rajatava Basu; Kaushik Roychoudhury; Stephan Theinert; Syamal Roy; Shyam Sundar; Peter Walden
Journal:  PLoS One       Date:  2006-12-20       Impact factor: 3.240

10.  Trypanosoma cruzi mitochondrial maxicircles display species- and strain-specific variation and a conserved element in the non-coding region.

Authors:  Scott J Westenberger; Gustavo C Cerqueira; Najib M El-Sayed; Bianca Zingales; David A Campbell; Nancy R Sturm
Journal:  BMC Genomics       Date:  2006-03-22       Impact factor: 3.969

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  2 in total

1.  The Trypanosoma cruzi Sylvio X10 strain maxicircle sequence: the third musketeer.

Authors:  Laura I Ruvalcaba-Trejo; Nancy R Sturm
Journal:  BMC Genomics       Date:  2011-01-24       Impact factor: 3.969

Review 2.  Exploring the environmental diversity of kinetoplastid flagellates in the high-throughput DNA sequencing era.

Authors:  Claudia Masini d'Avila-Levy; Carolina Boucinha; Alexei Kostygov; Helena Lúcia Carneiro Santos; Karina Alessandra Morelli; Anastasiia Grybchuk-Ieremenko; Linda Duval; Jan Votýpka; Vyacheslav Yurchenko; Philippe Grellier; Julius Lukeš
Journal:  Mem Inst Oswaldo Cruz       Date:  2015-11-24       Impact factor: 2.743

  2 in total

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