Literature DB >> 18229916

The role of solvent fluctuations in hydrophobic assembly.

Adam P Willard1, David Chandler.   

Abstract

We use a coarse-grained solvent model to study the self-assembly of two nanoscale hydrophobic particles in water. We show how solvent degrees of freedom are involved in the process. By using tools of transition path sampling, we elucidate the reaction coordinates describing the assembly. In accord with earlier expectations, we find that fluctuations of the liquid-vapor-like interface surrounding the solutes are significant, in this case leading to the formation of a vapor tunnel between the two solute particles. This tunnel accelerates assembly. While considering this specific model system, the approach we use illustrates a methodology that is broadly applicable.

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Year:  2008        PMID: 18229916     DOI: 10.1021/jp077186+

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  25 in total

1.  A Density Functional Theory Evaluation of Hydrophobic Solvation: Ne, Ar and Kr in a 50-Water Cluster. Implications for the Hydrophobic Effect.

Authors:  Nadya Kobko; Mateusz Marianski; Amparo Asensio; Robert Wieczorek; J J Dannenberg
Journal:  Comput Theor Chem       Date:  2011-11-22       Impact factor: 1.926

2.  Biophysics: More than a bystander.

Authors:  Philip Ball
Journal:  Nature       Date:  2011-10-26       Impact factor: 49.962

3.  On the roles of substrate binding and hinge unfolding in conformational changes of adenylate kinase.

Authors:  Jason B Brokaw; Jhih-Wei Chu
Journal:  Biophys J       Date:  2010-11-17       Impact factor: 4.033

4.  Role of electrostatics in modulating hydrophobic interactions and barriers to hydrophobic assembly.

Authors:  Brad A Bauer; Sandeep Patel
Journal:  J Phys Chem B       Date:  2010-06-24       Impact factor: 2.991

5.  Role of water and steric constraints in the kinetics of cavity-ligand unbinding.

Authors:  Pratyush Tiwary; Jagannath Mondal; Joseph A Morrone; B J Berne
Journal:  Proc Natl Acad Sci U S A       Date:  2015-09-14       Impact factor: 11.205

6.  Ordered water structure at hydrophobic graphite interfaces observed by 4D, ultrafast electron crystallography.

Authors:  Ding-Shyue Yang; Ahmed H Zewail
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-25       Impact factor: 11.205

Review 7.  Dewetting and hydrophobic interaction in physical and biological systems.

Authors:  Bruce J Berne; John D Weeks; Ruhong Zhou
Journal:  Annu Rev Phys Chem       Date:  2009       Impact factor: 12.703

8.  How hydrophobic drying forces impact the kinetics of molecular recognition.

Authors:  Jagannath Mondal; Joseph A Morrone; B J Berne
Journal:  Proc Natl Acad Sci U S A       Date:  2013-07-30       Impact factor: 11.205

9.  Instantaneous liquid interfaces.

Authors:  Adam P Willard; David Chandler
Journal:  J Phys Chem B       Date:  2010-02-11       Impact factor: 2.991

10.  Fluctuations of water near extended hydrophobic and hydrophilic surfaces.

Authors:  Amish J Patel; Patrick Varilly; David Chandler
Journal:  J Phys Chem B       Date:  2010-02-04       Impact factor: 2.991

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