Literature DB >> 18221865

Protein folding studied by single-molecule FRET.

Benjamin Schuler1, William A Eaton.   

Abstract

A complete understanding of a protein-folding mechanism requires description of the distribution of microscopic pathways that connect the folded and unfolded states. This distribution can, in principle, be described by computer simulations and theoretical models of protein folding, but is hidden in conventional experiments on large ensembles of molecules because only average properties are measured. A long-term goal of single-molecule fluorescence studies is to time-resolve the structural events as individual molecules make transitions between folded and unfolded states. Although such studies are still in their infancy, the work till now shows great promise and has already produced novel and important information on current issues in protein folding that has been impossible or difficult to obtain from ensemble measurements.

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Year:  2008        PMID: 18221865      PMCID: PMC2323684          DOI: 10.1016/j.sbi.2007.12.003

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  73 in total

1.  Watching proteins fold one molecule at a time.

Authors:  Elizabeth Rhoades; Eugene Gussakovsky; Gilad Haran
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-28       Impact factor: 11.205

Review 2.  Single-molecule folding.

Authors:  Xiaowei Zhuang; Matthias Rief
Journal:  Curr Opin Struct Biol       Date:  2003-02       Impact factor: 6.809

Review 3.  Toward a taxonomy of the denatured state: small angle scattering studies of unfolded proteins.

Authors:  Ian S Millett; Sebastian Doniach; Kevin W Plaxco
Journal:  Adv Protein Chem       Date:  2002

Review 4.  Insights into the structure and dynamics of unfolded proteins from nuclear magnetic resonance.

Authors:  H Jane Dyson; Peter E Wright
Journal:  Adv Protein Chem       Date:  2002

5.  The importance of explicit chain representation in protein folding models: an examination of Ising-like models.

Authors:  John Karanicolas; Charles L Brooks
Journal:  Proteins       Date:  2003-11-15

6.  Ultrafast dynamics of protein collapse from single-molecule photon statistics.

Authors:  Daniel Nettels; Irina V Gopich; Armin Hoffmann; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-14       Impact factor: 11.205

7.  Single-molecule measurement of protein folding kinetics.

Authors:  Everett A Lipman; Benjamin Schuler; Olgica Bakajin; William A Eaton
Journal:  Science       Date:  2003-08-29       Impact factor: 47.728

8.  The molecular basis for the chemical denaturation of proteins by urea.

Authors:  Brian J Bennion; Valerie Daggett
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-17       Impact factor: 11.205

9.  Biofunctionalized, ultrathin coatings of cross-linked star-shaped poly(ethylene oxide) allow reversible folding of immobilized proteins.

Authors:  Jürgen Groll; Elza V Amirgoulova; Thomas Ameringer; Colin D Heyes; Carlheinz Röcker; G Ulrich Nienhaus; Martin Möller
Journal:  J Am Chem Soc       Date:  2004-04-07       Impact factor: 15.419

10.  Unfolded protein and peptide dynamics investigated with single-molecule FRET and correlation spectroscopy from picoseconds to seconds.

Authors:  Daniel Nettels; Armin Hoffmann; Benjamin Schuler
Journal:  J Phys Chem B       Date:  2008-04-15       Impact factor: 2.991

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  212 in total

1.  Application of fluorescence resonance energy transfer in protein studies.

Authors:  Linlin Ma; Fan Yang; Jie Zheng
Journal:  J Mol Struct       Date:  2014-11-05       Impact factor: 3.196

2.  Effects of pH on proteins: predictions for ensemble and single-molecule pulling experiments.

Authors:  Edward P O'Brien; Bernard R Brooks; D Thirumalai
Journal:  J Am Chem Soc       Date:  2011-12-27       Impact factor: 15.419

3.  Fluorescence correlation spectroscopy of fast chain dynamics within denatured protein L.

Authors:  Eilon Sherman; Gilad Haran
Journal:  Chemphyschem       Date:  2011-01-26       Impact factor: 3.102

4.  Determining serpin conformational distributions with single molecule fluorescence.

Authors:  Nicole Mushero; Anne Gershenson
Journal:  Methods Enzymol       Date:  2011       Impact factor: 1.600

5.  Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy.

Authors:  Andrea Soranno; Brigitte Buchli; Daniel Nettels; Ryan R Cheng; Sonja Müller-Späth; Shawn H Pfeil; Armin Hoffmann; Everett A Lipman; Dmitrii E Makarov; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-06       Impact factor: 11.205

6.  Biochemistry. Unfolding the secrets of calmodulin.

Authors:  Robert B Best; Gerhard Hummer
Journal:  Science       Date:  2009-01-30       Impact factor: 47.728

7.  Extending single molecule fluorescence observation time by amplitude-modulated excitation.

Authors:  Lydia Kisley; Wei-Shun Chang; David Cooper; Andrea P Mansur; Christy F Landes
Journal:  Methods Appl Fluoresc       Date:  2013-09-01       Impact factor: 3.009

Review 8.  Single-molecule fluorescence studies of intrinsically disordered proteins and liquid phase separation.

Authors:  Irem Nasir; Paulo L Onuchic; Sergio R Labra; Ashok A Deniz
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2019-05-02       Impact factor: 3.036

9.  Dynamics of the Orientational Factor in Fluorescence Resonance Energy Transfer.

Authors:  Gerhard Hummer; Attila Szabo
Journal:  J Phys Chem B       Date:  2016-10-10       Impact factor: 2.991

10.  Characterizing Single-Molecule Conformational Changes Under Shear Flow with Fluorescence Microscopy.

Authors:  Yi Wang; Megan E Blauch; Avani V Pisapati; Nathan J Wittenberg; Xuanhong Cheng; X Frank Zhang
Journal:  J Vis Exp       Date:  2020-01-25       Impact factor: 1.355

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