Literature DB >> 17301233

Ultrafast dynamics of protein collapse from single-molecule photon statistics.

Daniel Nettels1, Irina V Gopich, Armin Hoffmann, Benjamin Schuler.   

Abstract

We use the statistics of photon emission from single molecules to probe the ultrafast dynamics of an unfolded protein via Förster resonance energy transfer. Global reconfiguration of the chain occurs on a time scale of approximately equal to 50 ns and slows down concomitant with chain collapse under folding conditions. These diffusive dynamics provide a missing link between the phenomenological chemical kinetics commonly used in protein folding and a physical description in terms of quantitative free energy surfaces. The experiments demonstrate the potential of single-molecule methods in accessing the biologically important nanosecond time scales even in heterogeneous populations.

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Year:  2007        PMID: 17301233      PMCID: PMC1815237          DOI: 10.1073/pnas.0611093104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  47 in total

1.  A theoretical search for folding/unfolding nuclei in three-dimensional protein structures.

Authors:  O V Galzitskaya; A V Finkelstein
Journal:  Proc Natl Acad Sci U S A       Date:  1999-09-28       Impact factor: 11.205

2.  Photon statistics and dynamics of fluorescence resonance energy transfer.

Authors:  Andrew J Berglund; Andrew C Doherty; Hideo Mabuchi
Journal:  Phys Rev Lett       Date:  2002-07-18       Impact factor: 9.161

3.  A microscopic view of miniprotein folding: enhanced folding efficiency through formation of an intermediate.

Authors:  Hannes Neuweiler; Sören Doose; Markus Sauer
Journal:  Proc Natl Acad Sci U S A       Date:  2005-11-03       Impact factor: 11.205

4.  Sub-microsecond protein folding.

Authors:  Jan Kubelka; Thang K Chiu; David R Davies; William A Eaton; James Hofrichter
Journal:  J Mol Biol       Date:  2006-03-31       Impact factor: 5.469

5.  Characterizing the unfolded states of proteins using single-molecule FRET spectroscopy and molecular simulations.

Authors:  Kusai A Merchant; Robert B Best; John M Louis; Irina V Gopich; William A Eaton
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-24       Impact factor: 11.205

6.  Single-molecule measurement of protein folding kinetics.

Authors:  Everett A Lipman; Benjamin Schuler; Olgica Bakajin; William A Eaton
Journal:  Science       Date:  2003-08-29       Impact factor: 47.728

7.  Dynamics of unfolded polypeptide chains as model for the earliest steps in protein folding.

Authors:  Florian Krieger; Beat Fierz; Oliver Bieri; Mario Drewello; Thomas Kiefhaber
Journal:  J Mol Biol       Date:  2003-09-05       Impact factor: 5.469

8.  A fluorescence-based method for direct measurement of submicrosecond intramolecular contact formation in biopolymers: an exploratory study with polypeptides.

Authors:  Robert R Hudgins; Fang Huang; Gabriela Gramlich; Werner M Nau
Journal:  J Am Chem Soc       Date:  2002-01-30       Impact factor: 15.419

9.  Intramolecular dynamics of chain molecules monitored by fluctuations in efficiency of excitation energy transfer. A theoretical study.

Authors:  E Haas; I Z Steinberg
Journal:  Biophys J       Date:  1984-10       Impact factor: 4.033

10.  Thermodynamics of the unfolding of the cold-shock protein from Thermotoga maritima.

Authors:  D Wassenberg; C Welker; R Jaenicke
Journal:  J Mol Biol       Date:  1999-05-28       Impact factor: 5.469

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  124 in total

1.  Fluorescence correlation spectroscopy of fast chain dynamics within denatured protein L.

Authors:  Eilon Sherman; Gilad Haran
Journal:  Chemphyschem       Date:  2011-01-26       Impact factor: 3.102

2.  Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy.

Authors:  Andrea Soranno; Brigitte Buchli; Daniel Nettels; Ryan R Cheng; Sonja Müller-Späth; Shawn H Pfeil; Armin Hoffmann; Everett A Lipman; Dmitrii E Makarov; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-06       Impact factor: 11.205

3.  From the Cover: Charge interactions can dominate the dimensions of intrinsically disordered proteins.

Authors:  Sonja Müller-Späth; Andrea Soranno; Verena Hirschfeld; Hagen Hofmann; Stefan Rüegger; Luc Reymond; Daniel Nettels; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-16       Impact factor: 11.205

4.  Intramolecular fluorescence correlation spectroscopy in a feedback tracking microscope.

Authors:  Kevin McHale; Hideo Mabuchi
Journal:  Biophys J       Date:  2010-07-07       Impact factor: 4.033

5.  Uncovering specific electrostatic interactions in the denatured states of proteins.

Authors:  Jana K Shen
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

6.  Extremely slow intramolecular diffusion in unfolded protein L.

Authors:  Steven A Waldauer; Olgica Bakajin; Lisa J Lapidus
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-19       Impact factor: 11.205

7.  The origin of nonmonotonic complex behavior and the effects of nonnative interactions on the diffusive properties of protein folding.

Authors:  Ronaldo J Oliveira; Paul C Whitford; Jorge Chahine; Jin Wang; José N Onuchic; Vitor B P Leite
Journal:  Biophys J       Date:  2010-07-21       Impact factor: 4.033

8.  Single-molecule spectroscopy of protein folding in a chaperonin cage.

Authors:  Hagen Hofmann; Frank Hillger; Shawn H Pfeil; Armin Hoffmann; Daniel Streich; Dominik Haenni; Daniel Nettels; Everett A Lipman; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2010-06-14       Impact factor: 11.205

9.  Protein folding, protein collapse, and tanford's transfer model: lessons from single-molecule FRET.

Authors:  Guy Ziv; Gilad Haran
Journal:  J Am Chem Soc       Date:  2009-03-04       Impact factor: 15.419

10.  Computational modeling highlights the role of the disordered Formin Homology 1 domain in profilin-actin transfer.

Authors:  Brandon G Horan; Gül H Zerze; Young C Kim; Dimitrios Vavylonis; Jeetain Mittal
Journal:  FEBS Lett       Date:  2018-05-24       Impact factor: 4.124

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