Literature DB >> 18217203

RNA-splicing endonuclease structure and function.

K Calvin1, H Li.   

Abstract

The RNA-splicing endonuclease is an evolutionarily conserved enzyme responsible for the excision of introns from nuclear transfer RNA (tRNA) and all archaeal RNAs. Since its first identification from yeast in the late 1970s, significant progress has been made toward understanding the biochemical mechanisms of this enzyme. Four families of the splicing endonucleases possessing the same active sites and overall architecture but with different subunit compositions have been identified. Two related consensus structures of the precursor RNA splice sites and the critical elements required for intron excision have been established. More recently, a glimpse was obtained of the structural mechanism by which the endonuclease recognizes the consensus RNA structures and cleaves at the splice sites. This review summarizes these findings and discusses their implications in the evolution of intron removal processes.

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Year:  2008        PMID: 18217203     DOI: 10.1007/s00018-008-7393-y

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  35 in total

1.  Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes.

Authors:  Jason Carte; Ruiying Wang; Hong Li; Rebecca M Terns; Michael P Terns
Journal:  Genes Dev       Date:  2008-12-15       Impact factor: 11.361

2.  Messenger RNA processing in Methanocaldococcus (Methanococcus) jannaschii.

Authors:  Jian Zhang; Gary J Olsen
Journal:  RNA       Date:  2009-08-28       Impact factor: 4.942

3.  Disrupted tRNA gene diversity and possible evolutionary scenarios.

Authors:  Junichi Sugahara; Kosuke Fujishima; Keisuke Morita; Masaru Tomita; Akio Kanai
Journal:  J Mol Evol       Date:  2009-10-14       Impact factor: 2.395

Review 4.  Transfer RNA processing in archaea: unusual pathways and enzymes.

Authors:  Ilka U Heinemann; Dieter Söll; Lennart Randau
Journal:  FEBS Lett       Date:  2010-01-21       Impact factor: 4.124

5.  Evolution of introns in the archaeal world.

Authors:  Giuseppe D Tocchini-Valentini; Paolo Fruscoloni; Glauco P Tocchini-Valentini
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-07       Impact factor: 11.205

6.  RNA in defense: CRISPRs protect prokaryotes against mobile genetic elements.

Authors:  Matthijs M Jore; Stan J J Brouns; John van der Oost
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-06-01       Impact factor: 10.005

7.  Engineering and expressing circular RNAs via tRNA splicing.

Authors:  John J Noto; Casey A Schmidt; A Gregory Matera
Journal:  RNA Biol       Date:  2017-04-12       Impact factor: 4.652

Review 8.  Cutting, dicing, healing and sealing: the molecular surgery of tRNA.

Authors:  Raphael R S Lopes; Alan C Kessler; Carla Polycarpo; Juan D Alfonzo
Journal:  Wiley Interdiscip Rev RNA       Date:  2015-03-06       Impact factor: 9.957

9.  Unusual noncanonical intron editing is important for tRNA splicing in Trypanosoma brucei.

Authors:  Mary Anne T Rubio; Zdeněk Paris; Kirk W Gaston; Ian M C Fleming; Paul Sample; Christopher R Trotta; Juan D Alfonzo
Journal:  Mol Cell       Date:  2013-10-03       Impact factor: 17.970

10.  Functional importance of crenarchaea-specific extra-loop revealed by an X-ray structure of a heterotetrameric crenarchaeal splicing endonuclease.

Authors:  Shigeo Yoshinari; Tomoo Shiba; Daniel-Ken Inaoka; Takashi Itoh; Genji Kurisu; Shigeharu Harada; Kiyoshi Kita; Yoh-ichi Watanabe
Journal:  Nucleic Acids Res       Date:  2009-06-10       Impact factor: 16.971

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