Literature DB >> 19878676

Transfer RNA processing in archaea: unusual pathways and enzymes.

Ilka U Heinemann1, Dieter Söll, Lennart Randau.   

Abstract

Transfer RNA (tRNA) molecules are highly conserved in length, sequence and structure in order to be functional in the ribosome. However, mostly in archaea, the short genes encoding tRNAs can be found disrupted, fragmented, with permutations or with non-functional mutations of conserved nucleotides. Here, we give an overview of recently discovered tRNA maturation pathways that require intricate processing steps to finally generate the standard tRNA from these unusual tRNA genes.

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Year:  2010        PMID: 19878676      PMCID: PMC2796832          DOI: 10.1016/j.febslet.2009.10.067

Source DB:  PubMed          Journal:  FEBS Lett        ISSN: 0014-5793            Impact factor:   4.124


  50 in total

1.  Coevolution of tRNA intron motifs and tRNA endonuclease architecture in Archaea.

Authors:  Giuseppe D Tocchini-Valentini; Paolo Fruscoloni; Glauco P Tocchini-Valentini
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-12       Impact factor: 11.205

Review 2.  A story with a good ending: tRNA 3'-end maturation by CCA-adding enzymes.

Authors:  Yong Xiong; Thomas A Steitz
Journal:  Curr Opin Struct Biol       Date:  2005-12-20       Impact factor: 6.809

3.  Achieving specific RNA cleavage activity by an inactive splicing endonuclease subunit through engineered oligomerization.

Authors:  Kate Calvin; Hong Li
Journal:  J Mol Biol       Date:  2006-11-18       Impact factor: 5.469

4.  RNA recognition and cleavage by a splicing endonuclease.

Authors:  Song Xue; Kate Calvin; Hong Li
Journal:  Science       Date:  2006-05-12       Impact factor: 47.728

5.  In silico screening of archaeal tRNA-encoding genes having multiple introns with bulge-helix-bulge splicing motifs.

Authors:  Junichi Sugahara; Nozomu Yachie; Kazuharu Arakawa; Masaru Tomita
Journal:  RNA       Date:  2007-03-16       Impact factor: 4.942

6.  Complete crystallographic analysis of the dynamics of CCA sequence addition.

Authors:  Kozo Tomita; Ryuichiro Ishitani; Shuya Fukai; Osamu Nureki
Journal:  Nature       Date:  2006-10-15       Impact factor: 49.962

7.  The heteromeric Nanoarchaeum equitans splicing endonuclease cleaves noncanonical bulge-helix-bulge motifs of joined tRNA halves.

Authors:  Lennart Randau; Kate Calvin; Michelle Hall; Jing Yuan; Mircea Podar; Hong Li; Dieter Söll
Journal:  Proc Natl Acad Sci U S A       Date:  2005-12-05       Impact factor: 11.205

8.  The APOBEC-2 crystal structure and functional implications for the deaminase AID.

Authors:  Courtney Prochnow; Ronda Bransteitter; Michael G Klein; Myron F Goodman; Xiaojiang S Chen
Journal:  Nature       Date:  2006-12-24       Impact factor: 49.962

9.  Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5'- and 3'-halves.

Authors:  Lennart Randau; Richard Münch; Michael J Hohn; Dieter Jahn; Dieter Söll
Journal:  Nature       Date:  2005-02-03       Impact factor: 49.962

10.  Transfer RNA genes from the hyperthermophilic Archaeon, Methanopyrus kandleri.

Authors:  J R Palmer; T Baltrus; J N Reeve; C J Daniels
Journal:  Biochim Biophys Acta       Date:  1992-10-20
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  15 in total

1.  Mapping the RNA-Seq trash bin: unusual transcripts in prokaryotic transcriptome sequencing data.

Authors:  Gero Doose; Maria Alexis; Rebecca Kirsch; Sven Findeiß; David Langenberger; Rainer Machné; Mario Mörl; Steve Hoffmann; Peter F Stadler
Journal:  RNA Biol       Date:  2013-05-13       Impact factor: 4.652

2.  Minimal requirements for reverse polymerization and tRNA repair by tRNAHis guanylyltransferase.

Authors:  Riddhi Desai; Kunmo Kim; Hanna C Büchsenschütz; Allan W Chen; Yumin Bi; Mitchell R Mann; Matthew A Turk; Christina Z Chung; Ilka U Heinemann
Journal:  RNA Biol       Date:  2017-09-29       Impact factor: 4.652

3.  The intron of tRNA-TrpCCA is dispensable for growth and translation of Saccharomyces cerevisiae.

Authors:  Shunsuke Mori; Takuya Kajita; Toshiya Endo; Tohru Yoshihisa
Journal:  RNA       Date:  2011-07-22       Impact factor: 4.942

Review 4.  Cellular dynamics of tRNAs and their genes.

Authors:  Anita K Hopper; Dave A Pai; David R Engelke
Journal:  FEBS Lett       Date:  2010-01-21       Impact factor: 4.124

Review 5.  Diversity and roles of (t)RNA ligases.

Authors:  Johannes Popow; Alexander Schleiffer; Javier Martinez
Journal:  Cell Mol Life Sci       Date:  2012-03-17       Impact factor: 9.261

6.  tRNA 5'-end repair activities of tRNAHis guanylyltransferase (Thg1)-like proteins from Bacteria and Archaea.

Authors:  Bhalchandra S Rao; Emily L Maris; Jane E Jackman
Journal:  Nucleic Acids Res       Date:  2010-11-03       Impact factor: 16.971

7.  An ancient family of SelB elongation factor-like proteins with a broad but disjunct distribution across archaea.

Authors:  Gemma C Atkinson; Vasili Hauryliuk; Tanel Tenson
Journal:  BMC Evol Biol       Date:  2011-01-21       Impact factor: 3.260

8.  Discovery of permuted and recently split transfer RNAs in Archaea.

Authors:  Patricia P Chan; Aaron E Cozen; Todd M Lowe
Journal:  Genome Biol       Date:  2011-04-13       Impact factor: 13.583

Review 9.  Circularly permuted tRNA genes: their expression and implications for their physiological relevance and development.

Authors:  Akiko Soma
Journal:  Front Genet       Date:  2014-04-01       Impact factor: 4.599

Review 10.  Handling tRNA introns, archaeal way and eukaryotic way.

Authors:  Tohru Yoshihisa
Journal:  Front Genet       Date:  2014-07-10       Impact factor: 4.599

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