Literature DB >> 25755220

Cutting, dicing, healing and sealing: the molecular surgery of tRNA.

Raphael R S Lopes1, Alan C Kessler, Carla Polycarpo, Juan D Alfonzo.   

Abstract

All organisms encode transfer RNAs (tRNAs) that are synthesized as precursor molecules bearing extra sequences at their 5' and 3' ends; some tRNAs also contain introns, which are removed by splicing. Despite commonality in what the ultimate goal is (i.e., producing a mature tRNA), mechanistically, tRNA splicing differs between Bacteria and Archaea or Eukarya. The number and position of tRNA introns varies between organisms and even between different tRNAs within the same organism, suggesting a degree of plasticity in both the evolution and persistence of modern tRNA splicing systems. Here we will review recent findings that not only highlight nuances in splicing pathways but also provide potential reasons for the maintenance of introns in tRNA. Recently, connections between defects in the components of the tRNA splicing machinery and medically relevant phenotypes in humans have been reported. These differences will be discussed in terms of the importance of splicing for tRNA function and in a broader context on how tRNA splicing defects can often have unpredictable consequences.
© 2015 John Wiley & Sons, Ltd.

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Year:  2015        PMID: 25755220      PMCID: PMC4397177          DOI: 10.1002/wrna.1279

Source DB:  PubMed          Journal:  Wiley Interdiscip Rev RNA        ISSN: 1757-7004            Impact factor:   9.957


  73 in total

1.  Crystal structure and evolution of a transfer RNA splicing enzyme.

Authors:  H Li; C R Trotta; J Abelson
Journal:  Science       Date:  1998-04-10       Impact factor: 47.728

2.  Properties of H. volcanii tRNA intron endonuclease reveal a relationship between the archaeal and eucaryal tRNA intron processing systems.

Authors:  K Kleman-Leyer; D W Armbruster; C J Daniels
Journal:  Cell       Date:  1997-06-13       Impact factor: 41.582

3.  Structural characterization of the catalytic subunit of a novel RNA splicing endonuclease.

Authors:  Kate Calvin; Michelle D Hall; Fangmin Xu; Song Xue; Hong Li
Journal:  J Mol Biol       Date:  2005-09-30       Impact factor: 5.469

4.  tRNA ligase is required for regulated mRNA splicing in the unfolded protein response.

Authors:  C Sidrauski; J S Cox; P Walter
Journal:  Cell       Date:  1996-11-01       Impact factor: 41.582

5.  Precise excision of intervening sequences from precursor tRNAs by a membrane-associated yeast endonuclease.

Authors:  C L Peebles; P Gegenheimer; J Abelson
Journal:  Cell       Date:  1983-02       Impact factor: 41.582

6.  HSPC117 is the essential subunit of a human tRNA splicing ligase complex.

Authors:  Johannes Popow; Markus Englert; Stefan Weitzer; Alexander Schleiffer; Beata Mierzwa; Karl Mechtler; Simon Trowitzsch; Cindy L Will; Reinhard Lührmann; Dieter Söll; Javier Martinez
Journal:  Science       Date:  2011-02-11       Impact factor: 47.728

7.  Mammalian 2',3' cyclic nucleotide phosphodiesterase (CNP) can function as a tRNA splicing enzyme in vivo.

Authors:  Beate Schwer; Anna Aronova; Alejandro Ramirez; Peter Braun; Stewart Shuman
Journal:  RNA       Date:  2007-12-19       Impact factor: 4.942

Review 8.  The spliceosome: the most complex macromolecular machine in the cell?

Authors:  Timothy W Nilsen
Journal:  Bioessays       Date:  2003-12       Impact factor: 4.345

9.  Accumulation of pre-tRNA splicing '2/3' intermediates in a Saccharomyces cerevisiae mutant.

Authors:  C K Ho; R Rauhut; U Vijayraghavan; J Abelson
Journal:  EMBO J       Date:  1990-04       Impact factor: 11.598

10.  Plant tRNA ligases are multifunctional enzymes that have diverged in sequence and substrate specificity from RNA ligases of other phylogenetic origins.

Authors:  Markus Englert; Hildburg Beier
Journal:  Nucleic Acids Res       Date:  2005-01-14       Impact factor: 16.971

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  14 in total

1.  Repairing tRNA termini: News from the 3' end.

Authors:  Christiane Rammelt; Walter Rossmanith
Journal:  RNA Biol       Date:  2016-09-23       Impact factor: 4.652

Review 2.  The role of intracellular compartmentalization on tRNA processing and modification.

Authors:  Alan C Kessler; Gabriel Silveira d'Almeida; Juan D Alfonzo
Journal:  RNA Biol       Date:  2017-09-26       Impact factor: 4.652

Review 3.  How the intracellular partitioning of tRNA and tRNA modification enzymes affects mitochondrial function.

Authors:  Zdeněk Paris; Juan D Alfonzo
Journal:  IUBMB Life       Date:  2018-10-25       Impact factor: 3.885

4.  Retrograde nuclear transport from the cytoplasm is required for tRNATyr maturation in T. brucei.

Authors:  Alan C Kessler; Sneha S Kulkarni; Mellie J Paulines; Mary Anne T Rubio; Patrick A Limbach; Zdeněk Paris; Juan D Alfonzo
Journal:  RNA Biol       Date:  2017-11-03       Impact factor: 4.652

Review 5.  PARPs in genome stability and signal transduction: implications for cancer therapy.

Authors:  Luca Palazzo; Ivan Ahel
Journal:  Biochem Soc Trans       Date:  2018-11-12       Impact factor: 5.407

6.  A novel 5'-hydroxyl dinucleotide hydrolase activity for the DXO/Rai1 family of enzymes.

Authors:  Selom K Doamekpor; Agnieszka Gozdek; Aleksandra Kwasnik; Joanna Kufel; Liang Tong
Journal:  Nucleic Acids Res       Date:  2020-01-10       Impact factor: 16.971

Review 7.  Nucleoside modifications in the regulation of gene expression: focus on tRNA.

Authors:  Markus Duechler; Grażyna Leszczyńska; Elzbieta Sochacka; Barbara Nawrot
Journal:  Cell Mol Life Sci       Date:  2016-04-19       Impact factor: 9.261

8.  Orthologs, turn-over, and remolding of tRNAs in primates and fruit flies.

Authors:  Cristian A Velandia-Huerto; Sarah J Berkemer; Anne Hoffmann; Nancy Retzlaff; Liliana C Romero Marroquín; Maribel Hernández-Rosales; Peter F Stadler; Clara I Bermúdez-Santana
Journal:  BMC Genomics       Date:  2016-08-11       Impact factor: 3.969

Review 9.  Disruption of the RNA modifications that target the ribosome translation machinery in human cancer.

Authors:  Maxime Janin; Laia Coll-SanMartin; Manel Esteller
Journal:  Mol Cancer       Date:  2020-04-02       Impact factor: 27.401

Review 10.  ADP-ribosylation: new facets of an ancient modification.

Authors:  Luca Palazzo; Andreja Mikoč; Ivan Ahel
Journal:  FEBS J       Date:  2017-04-26       Impact factor: 5.542

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