Literature DB >> 30153374

Nucleic Acid-Barcoding Technologies: Converting DNA Sequencing into a Broad-Spectrum Molecular Counter.

Glen Liszczak1,2, Tom W Muir1.   

Abstract

The emergence of high-throughput DNA sequencing technologies sparked a revolution in the field of genomics that has rippled into many branches of the life and physical sciences. The remarkable sensitivity, specificity, throughput, and multiplexing capacity that are inherent to parallel DNA sequencing have since motivated its use as a broad-spectrum molecular counter. A key aspect of extrapolating DNA sequencing to non-traditional applications is the need to append nucleic-acid barcodes to entities of interest. In this review, we describe the chemical and biochemical approaches that have enabled nucleic-acid barcoding of proteinaceous and non-proteinaceous materials and provide examples of downstream technologies that have been made possible by DNA-encoded molecules. As commercially available high-throughput sequencers were first released less than 15 years ago, we believe related applications will continue to mature and close by proposing new frontiers to support this assertion.
© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  chemical biology; drug discovery; high-throughput biochemistry; nucleic-acid chemistry; protein chemistry

Year:  2019        PMID: 30153374      PMCID: PMC6748390          DOI: 10.1002/anie.201808956

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  164 in total

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1.  Protein-Nucleic Acid Conjugation with Sterol Linkers Using Hedgehog Autoprocessing.

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Journal:  Bioconjug Chem       Date:  2019-10-10       Impact factor: 4.774

2.  Unbiased discovery of autoantibodies associated with severe COVID-19 via genome-scale self-assembled DNA-barcoded protein libraries.

Authors:  Joel J Credle; Jonathan Gunn; Puwanat Sangkhapreecha; Daniel R Monaco; Xuwen Alice Zheng; Hung-Ji Tsai; Azaan Wilbon; William R Morgenlander; Andre Rastegar; Yi Dong; Sahana Jayaraman; Lorenzo Tosi; Biju Parekkadan; Alan N Baer; Mario Roederer; Evan M Bloch; Aaron A R Tobian; Israel Zyskind; Jonathan I Silverberg; Avi Z Rosenberg; Andrea L Cox; Tom Lloyd; Andrew L Mammen; H Benjamin Larman
Journal:  Nat Biomed Eng       Date:  2022-08-19       Impact factor: 29.234

3.  Molecular underpinnings of ssDNA specificity by Rep HUH-endonucleases and implications for HUH-tag multiplexing and engineering.

Authors:  Kassidy J Tompkins; Mo Houtti; Lauren A Litzau; Eric J Aird; Blake A Everett; Andrew T Nelson; Leland Pornschloegl; Lidia K Limón-Swanson; Robert L Evans; Karen Evans; Ke Shi; Hideki Aihara; Wendy R Gordon
Journal:  Nucleic Acids Res       Date:  2021-01-25       Impact factor: 16.971

4.  Neutralizing IFNL3 Autoantibodies in Severe COVID-19 Identified Using Molecular Indexing of Proteins by Self-Assembly.

Authors:  Joel J Credle; Jonathan Gunn; Puwanat Sangkhapreecha; Daniel R Monaco; Xuwen Alice Zheng; Hung-Ji Tsai; Azaan Wilbon; William R Morgenlander; Yi Dong; Sahana Jayaraman; Lorenzo Tosi; Biju Parekkadan; Alan N Baer; Mario Roederer; Evan M Bloch; Aaron A R Tobian; Israel Zyskind; Jonathan I Silverberg; Avi Z Rosenberg; Andrea L Cox; Tom Lloyd; Andrew L Mammen; H Benjamin Larman
Journal:  bioRxiv       Date:  2021-03-03
  4 in total

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