Literature DB >> 18214466

Small angle neutron and X-ray scattering in structural biology: recent examples from the literature.

Cameron Neylon1.   

Abstract

Small angle scattering can provide unique structural information on the shape, domain organisation, and interactions of biomacromolecules in solution. Small angle neutron scattering (SANS) combined with deuterium labelling makes it possible to define the positions of specific components within a complex while small angle X-ray scattering (SAXS) provides more precise data on the overall shape. Here I review four recent publications, three of which were presented at the Neutrons in Biology meeting at the STFC Rutherford Appleton Laboratory in July 2007, that utilise SANS, SAXS, and complementary techniques to define the solution structure of large multidomain proteins and macromolecular complexes. These four papers emphasise the critical importance of sample quality and characterisation as well as the important role played by complementary techniques in building structural models based on small angle scattering data. They show the ability of SANS and SAXS in determining solution structures provides an important complementary structural technique for large, flexible, and glycosylated proteins where high resolution structural techniques, such as crystallography and NMR, cannot be applied.

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Year:  2008        PMID: 18214466     DOI: 10.1007/s00249-008-0259-2

Source DB:  PubMed          Journal:  Eur Biophys J        ISSN: 0175-7571            Impact factor:   1.733


  35 in total

Review 1.  Synaptic adhesion molecules.

Authors:  Masahito Yamagata; Joshua R Sanes; Joshua A Weiner
Journal:  Curr Opin Cell Biol       Date:  2003-10       Impact factor: 8.382

2.  Pentameric and decameric structures in solution of serum amyloid P component by X-ray and neutron scattering and molecular modelling analyses.

Authors:  A W Ashton; M K Boehm; J R Gallimore; M B Pepys; S J Perkins
Journal:  J Mol Biol       Date:  1997-09-26       Impact factor: 5.469

3.  Refinement of multidomain protein structures by combination of solution small-angle X-ray scattering and NMR data.

Authors:  Alexander Grishaev; Justin Wu; Jill Trewhella; Ad Bax
Journal:  J Am Chem Soc       Date:  2005-11-30       Impact factor: 15.419

4.  Global rigid body modeling of macromolecular complexes against small-angle scattering data.

Authors:  Maxim V Petoukhov; Dmitri I Svergun
Journal:  Biophys J       Date:  2005-05-27       Impact factor: 4.033

Review 5.  Neuroligins and neurexins: linking cell adhesion, synapse formation and cognitive function.

Authors:  Camin Dean; Thomas Dresbach
Journal:  Trends Neurosci       Date:  2005-12-07       Impact factor: 13.837

6.  Crystal structure of a putative type I restriction-modification S subunit from Mycoplasma genitalium.

Authors:  Bárbara M Calisto; Oscar Q Pich; Jaume Piñol; Ignacio Fita; Enrique Querol; Xavier Carpena
Journal:  J Mol Biol       Date:  2005-08-26       Impact factor: 5.469

7.  Synaptic arrangement of the neuroligin/beta-neurexin complex revealed by X-ray and neutron scattering.

Authors:  Davide Comoletti; Alexander Grishaev; Andrew E Whitten; Igor Tsigelny; Palmer Taylor; Jill Trewhella
Journal:  Structure       Date:  2007-06       Impact factor: 5.006

8.  Gene selection, alternative splicing, and post-translational processing regulate neuroligin selectivity for beta-neurexins.

Authors:  Davide Comoletti; Robyn E Flynn; Antony A Boucard; Borries Demeler; Virgil Schirf; Jianxin Shi; Lori L Jennings; Helen R Newlin; Thomas C Südhof; Palmer Taylor
Journal:  Biochemistry       Date:  2006-10-24       Impact factor: 3.162

9.  The structure of the KinA-Sda complex suggests an allosteric mechanism of histidine kinase inhibition.

Authors:  Andrew E Whitten; David A Jacques; Boualem Hammouda; Tracey Hanley; Glenn F King; J Mitchell Guss; Jill Trewhella; David B Langley
Journal:  J Mol Biol       Date:  2007-02-03       Impact factor: 5.469

10.  Characterization of the interaction of a recombinant soluble neuroligin-1 with neurexin-1beta.

Authors:  Davide Comoletti; Robyn Flynn; Lori L Jennings; Alexander Chubykin; Takehito Matsumura; Hana Hasegawa; Thomas C Südhof; Palmer Taylor
Journal:  J Biol Chem       Date:  2003-09-30       Impact factor: 5.157

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  28 in total

1.  Kinetic asymmetry of subunit exchange of homooligomeric protein as revealed by deuteration-assisted small-angle neutron scattering.

Authors:  Masaaki Sugiyama; Eiji Kurimoto; Hirokazu Yagi; Kazuhiro Mori; Toshiharu Fukunaga; Mitsuhiro Hirai; Giuseppe Zaccai; Koichi Kato
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

2.  Computational molecular biology approaches to ligand-target interactions.

Authors:  Paola Lupieri; Chuong Ha Hung Nguyen; Zhaleh Ghaemi Bafghi; Alejandro Giorgetti; Paolo Carloni
Journal:  HFSP J       Date:  2009-03-10

Review 3.  Small angle neutron scattering for the study of solubilised membrane proteins.

Authors:  Cécile Breyton; Frank Gabel; Mathilde Lethier; Ali Flayhan; Grégory Durand; Jean-Michel Jault; Céline Juillan-Binard; Lionel Imbert; Martine Moulin; Stéphanie Ravaud; Michael Härtlein; Christine Ebel
Journal:  Eur Phys J E Soft Matter       Date:  2013-07-16       Impact factor: 1.890

Review 4.  Neutrons for biologists: a beginner's guide, or why you should consider using neutrons.

Authors:  Jeremy H Lakey
Journal:  J R Soc Interface       Date:  2009-08-05       Impact factor: 4.118

5.  Nonadditivity in conformational entropy upon molecular rigidification reveals a universal mechanism affecting folding cooperativity.

Authors:  Oleg K Vorov; Dennis R Livesay; Donald J Jacobs
Journal:  Biophys J       Date:  2011-02-16       Impact factor: 4.033

6.  Effects of macromolecular crowding on an intrinsically disordered protein characterized by small-angle neutron scattering with contrast matching.

Authors:  Daniel Johansen; Cy M J Jeffries; Boualem Hammouda; Jill Trewhella; David P Goldenberg
Journal:  Biophys J       Date:  2011-02-16       Impact factor: 4.033

Review 7.  Nuclear magnetic resonance analysis of protein-DNA interactions.

Authors:  S Campagne; V Gervais; A Milon
Journal:  J R Soc Interface       Date:  2011-03-09       Impact factor: 4.118

Review 8.  Small-angle scattering for structural biology--expanding the frontier while avoiding the pitfalls.

Authors:  David A Jacques; Jill Trewhella
Journal:  Protein Sci       Date:  2010-04       Impact factor: 6.725

Review 9.  Emerging applications of small angle solution scattering in structural biology.

Authors:  Barnali N Chaudhuri
Journal:  Protein Sci       Date:  2015-02-12       Impact factor: 6.725

10.  Improving yields of deuterated, methyl labeled protein by growing in H2O.

Authors:  Evan S O'Brien; Danny W Lin; Brian Fuglestad; Matthew A Stetz; Travis Gosse; Cecilia Tommos; A Joshua Wand
Journal:  J Biomol NMR       Date:  2018-08-02       Impact factor: 2.835

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