Literature DB >> 18205459

Molecular origin of the hydrophobic effect: analysis using the angle-dependent integral equation theory.

Masahiro Kinoshita1.   

Abstract

The molecular origin of the hydrophobic effect is investigated using the angle-dependent integral equation theory combined with the multipolar water model. The thermodynamic quantities of solvation (excess quantities) of a nonpolar solute are decomposed into the translational and orientational contributions. The translational contributions are substantially larger with the result that the temperature dependence of the solute solubility, for example, can well be reproduced by a model simple fluid where the particles interact through strongly attractive potential such as water and the particle size is as small as that of water. The thermodynamic quantities of solvation for carbon tetrachloride, whose molecular size is approximately 1.9 times larger than that of water, are roughly an order of magnitude smaller than those for water and extremely insensitive to the strength of solvent-solvent attractive interaction and the temperature. The orientational contributions to the solvation energy and entropy are further decomposed into the solute-water pair correlation terms and the solute-water-water triplet and higher-order correlation terms. It is argued that the formation of highly ordered structure arising from the enhanced hydrogen bonding does not occur in the vicinity of the solute. Our proposition is that the hydrophobic effect is ascribed to the interplay of the exceptionally small molecular size and the strongly attractive interaction of water, and not necessarily to its hydrogen-bonding properties.

Entities:  

Year:  2008        PMID: 18205459     DOI: 10.1063/1.2823733

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  10 in total

1.  Statistical Thermodynamics for Actin-Myosin Binding: The Crucial Importance of Hydration Effects.

Authors:  Hiraku Oshima; Tomohiko Hayashi; Masahiro Kinoshita
Journal:  Biophys J       Date:  2016-06-07       Impact factor: 4.033

Review 2.  A new theoretical approach to biological self-assembly.

Authors:  Masahiro Kinoshita
Journal:  Biophys Rev       Date:  2013-02-01

Review 3.  Accurate and rapid calculation of hydration free energy and its physical implication for biomolecular functions.

Authors:  Masahiro Kinoshita; Tomohiko Hayashi
Journal:  Biophys Rev       Date:  2020-03-17

4.  Binding of an RNA aptamer and a partial peptide of a prion protein: crucial importance of water entropy in molecular recognition.

Authors:  Tomohiko Hayashi; Hiraku Oshima; Tsukasa Mashima; Takashi Nagata; Masato Katahira; Masahiro Kinoshita
Journal:  Nucleic Acids Res       Date:  2014-05-06       Impact factor: 16.971

5.  Analytical 2-Dimensional Model of Nonpolar and Ionic Solvation in Water.

Authors:  Ajeet Kumar Yadav; Pradipta Bandyopadhyay; Tomaz Urbic; Ken A Dill
Journal:  J Phys Chem B       Date:  2021-02-04       Impact factor: 2.991

Review 6.  Importance of water entropy in rotation mechanism of F1-ATPase.

Authors:  Takashi Yoshidome
Journal:  Biophysics (Nagoya-shi)       Date:  2011-11-18

7.  Effects of ligand binding on the stability of aldo-keto reductases: Implications for stabilizer or destabilizer chaperones.

Authors:  Aurangazeb Kabir; Ryo P Honda; Yuji O Kamatari; Satoshi Endo; Mayuko Fukuoka; Kazuo Kuwata
Journal:  Protein Sci       Date:  2016-09-19       Impact factor: 6.725

Review 8.  Importance of translational entropy of water in biological self-assembly processes like protein folding.

Authors:  Masahiro Kinoshita
Journal:  Int J Mol Sci       Date:  2009-03-11       Impact factor: 6.208

9.  Physicochemical origin of high correlation between thermal stability of a protein and its packing efficiency: a theoretical study for staphylococcal nuclease mutants.

Authors:  Koji Oda; Masahiro Kinoshita
Journal:  Biophys Physicobiol       Date:  2015-07-31

10.  A scoring function based on solvation thermodynamics for protein structure prediction.

Authors:  Shiqiao Du; Yuichi Harano; Masahiro Kinoshita; Minoru Sakurai
Journal:  Biophysics (Nagoya-shi)       Date:  2012-09-19
  10 in total

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