| Literature DB >> 28510109 |
Abstract
Upon biological self-assembly, the number of accessible translational configurations of water in the system increases considerably, leading to a large gain in water entropy. It is important to calculate the solvation entropy of a biomolecule with a prescribed structure by accounting for the change in water-water correlations caused by solute insertion. Modeling water as a dielectric continuum is not capable of capturing the physical essence of the water entropy effect. As a reliable tool, we propose a hybrid of the angle-dependent integral equation theory combined with a multipolar water model and a morphometric approach. Using our methods wherein the water entropy effect is treated as the key factor, we can elucidate a variety of processes such as protein folding, cold, pressure, and heat denaturating of a protein, molecular recognition, ordered association of proteins such as amyloid fibril formation, and functioning of ATP-driven proteins.Entities:
Keywords: ATP-driven protein; Biological self-assembly; Integral equation theory; Molecular recognition; Morphometric approach; Protein denaturation; Protein folding; Solvation entropy
Year: 2013 PMID: 28510109 PMCID: PMC5425704 DOI: 10.1007/s12551-013-0100-8
Source DB: PubMed Journal: Biophys Rev ISSN: 1867-2450