Literature DB >> 27276267

Statistical Thermodynamics for Actin-Myosin Binding: The Crucial Importance of Hydration Effects.

Hiraku Oshima1, Tomohiko Hayashi1, Masahiro Kinoshita2.   

Abstract

Actomyosin is an important molecular motor, and the binding of actin and myosin is an essential research target in biophysics. Nevertheless, the physical factors driving or opposing the binding are still unclear. Here, we investigate the role of water in actin-myosin binding using the most reliable statistical-mechanical method currently available for assessing biomolecules immersed in water. This method is characterized as follows: water is treated not as a dielectric continuum but as an ensemble of molecules; the polyatomic structures of proteins are taken into consideration; and the binding free energy is decomposed into physically insightful entropic and energetic components by accounting for the hydration effect to its full extent. We find that the actin-myosin binding brings large gains of electrostatic and Lennard-Jones attractive interactions. However, these gains are accompanied by even larger losses of actin-water and myosin-water electrostatic and LJ attractive interactions. Although roughly half of the energy increase due to the losses is cancelled out by the energy decrease arising from structural reorganization of the water released upon binding, the remaining energy increase is still larger than the energy decrease brought by the gains mentioned above. Hence, the net change in system energy is positive, which opposes binding. Importantly, the binding is driven by a large gain of configurational entropy of water, which surpasses the positive change in system energy and the conformational entropy loss occurring for actin and myosin. The principal physical origin of the large water-entropy gain is as follows: the actin-myosin interface is closely packed with the achievement of high shape complementarity on the atomic level, leading to a large increase in the total volume available to the translational displacement of water molecules in the system and a resultant reduction of water crowding (i.e., entropic correlations among water molecules).
Copyright © 2016 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 27276267      PMCID: PMC4906361          DOI: 10.1016/j.bpj.2016.05.006

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  44 in total

1.  Impact of chemical heterogeneity on protein self-assembly in water.

Authors:  Song-Ho Chong; Sihyun Ham
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-26       Impact factor: 11.205

2.  A novel actin binding site of myosin required for effective muscle contraction.

Authors:  Boglárka H Várkuti; Zhenhui Yang; Bálint Kintses; Péter Erdélyi; Irén Bárdos-Nagy; Attila L Kovács; Péter Hári; Miklós Kellermayer; Tibor Vellai; András Málnási-Csizmadia
Journal:  Nat Struct Mol Biol       Date:  2012-02-12       Impact factor: 15.369

3.  Mechanism of One-to-Many Molecular Recognition Accompanying Target-Dependent Structure Formation: For the Tumor Suppressor p53 Protein as an Example.

Authors:  Tomohiko Hayashi; Hiraku Oshima; Satoshi Yasuda; Masahiro Kinoshita
Journal:  J Phys Chem B       Date:  2015-10-19       Impact factor: 2.991

4.  Three myosin V structures delineate essential features of chemo-mechanical transduction.

Authors:  Pierre-Damien Coureux; H Lee Sweeney; Anne Houdusse
Journal:  EMBO J       Date:  2004-10-28       Impact factor: 11.598

5.  Comparison of multiple Amber force fields and development of improved protein backbone parameters.

Authors:  Viktor Hornak; Robert Abel; Asim Okur; Bentley Strockbine; Adrian Roitberg; Carlos Simmerling
Journal:  Proteins       Date:  2006-11-15

Review 6.  Principles of protein-protein interactions: what are the preferred ways for proteins to interact?

Authors:  Ozlem Keskin; Attila Gursoy; Buyong Ma; Ruth Nussinov
Journal:  Chem Rev       Date:  2008-03-21       Impact factor: 60.622

7.  All-atom molecular dynamics simulations of actin-myosin interactions: a comparative study of cardiac α myosin, β myosin, and fast skeletal muscle myosin.

Authors:  Minghui Li; Wenjun Zheng
Journal:  Biochemistry       Date:  2013-11-13       Impact factor: 3.162

8.  The effects of temperature and salts on myosin subfragment-1 and F-actin association.

Authors:  S Highsmith
Journal:  Arch Biochem Biophys       Date:  1977-04-30       Impact factor: 4.013

9.  Essential roles of protein-solvent many-body correlation in solvent-entropy effect on protein folding and denaturation: comparison between hard-sphere solvent and water.

Authors:  Hiraku Oshima; Masahiro Kinoshita
Journal:  J Chem Phys       Date:  2015-04-14       Impact factor: 3.488

Review 10.  Modulators of protein-protein interactions.

Authors:  Lech-Gustav Milroy; Tom N Grossmann; Sven Hennig; Luc Brunsveld; Christian Ottmann
Journal:  Chem Rev       Date:  2014-04-15       Impact factor: 60.622

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  1 in total

1.  Competition between chiral solvents and chiral monomers in the helical bias of supramolecular polymers.

Authors:  Marcin L Ślęczkowski; Mathijs F J Mabesoone; Piotr Ślęczkowski; Anja R A Palmans; E W Meijer
Journal:  Nat Chem       Date:  2020-11-30       Impact factor: 24.427

  1 in total

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