Literature DB >> 18195364

Energy transformations early in the bacteriorhodopsin photocycle revealed by DNP-enhanced solid-state NMR.

Melody L Mak-Jurkauskas1, Vikram S Bajaj, Melissa K Hornstein, Marina Belenky, Robert G Griffin, Judith Herzfeld.   

Abstract

By exploiting dynamic nuclear polarization (DNP) at 90 K, we observe the first NMR spectrum of the K intermediate in the ion-motive photocycle of bacteriorhodopsin. The intermediate is identified by its reversion to the resting state of the protein in red light and by its thermal decay to the L intermediate. The (15)N chemical shift of the Schiff base in K indicates that contact has been lost with its counterion. Under these circumstances, the visible absorption of K is expected to be more red-shifted than is observed and this suggests torsion around single bonds of the retinylidene chromophore. This is in contrast to the development of a strong counterion interaction and double bond torsion in L. Thus, photon energy is stored in electrostatic modes in K and is transferred to torsional modes in L. This transfer is facilitated by the reduction in bond alternation that occurs with the initial loss of the counterion interaction, and is driven by the attraction of the Schiff base to a new counterion. Nevertheless, the process appears to be difficult, as judged by the multiple L substates, with weaker counterion interactions, that are trapped at lower temperatures. The double-bond torsion ultimately developed in the first half of the photocycle is probably responsible for enforcing vectoriality in the pump by causing a decisive switch in the connectivity of the active site once the Schiff base and its counterion are neutralized by proton transfer.

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Year:  2008        PMID: 18195364      PMCID: PMC2242711          DOI: 10.1073/pnas.0706156105

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  35 in total

Review 1.  Trapping and spectroscopic identification of the photointermediates of bacteriorhodopsin at low temperatures.

Authors:  S P Balashov; T G Ebrey
Journal:  Photochem Photobiol       Date:  2001-05       Impact factor: 3.421

Review 2.  NMR probes of vectoriality in the proton-motive photocycle of bacteriorhodopsin: evidence for an 'electrostatic steering' mechanism.

Authors:  J Herzfeld; B Tounge
Journal:  Biochim Biophys Acta       Date:  2000-08-30

3.  Structural changes in the L photointermediate of bacteriorhodopsin.

Authors:  Janos K Lanyi; Brigitte Schobert
Journal:  J Mol Biol       Date:  2006-11-10       Impact factor: 5.469

4.  Resonance Raman spectra of bacteriorhodopsin's primary photoproduct: evidence for a distorted 13-cis retinal chromophore.

Authors:  M Braiman; R Mathies
Journal:  Proc Natl Acad Sci U S A       Date:  1982-01       Impact factor: 11.205

5.  Solid-state 13C and 15N NMR study of the low pH forms of bacteriorhodopsin.

Authors:  H J de Groot; S O Smith; J Courtin; E van den Berg; C Winkel; J Lugtenburg; R G Griffin; J Herzfeld
Journal:  Biochemistry       Date:  1990-07-24       Impact factor: 3.162

6.  Crystallographic structure of the K intermediate of bacteriorhodopsin: conservation of free energy after photoisomerization of the retinal.

Authors:  Brigitte Schobert; Jill Cupp-Vickery; Viktor Hornak; Steven Smith; Janos Lanyi
Journal:  J Mol Biol       Date:  2002-08-23       Impact factor: 5.469

7.  Chemical shift referencing in MAS solid state NMR.

Authors:  Corey R Morcombe; Kurt W Zilm
Journal:  J Magn Reson       Date:  2003-06       Impact factor: 2.229

8.  Resonance Raman spectroscopy of specifically [epsilon-15N]lysine-labeled bacteriorhodopsin.

Authors:  P V Argade; K J Rothschild; A H Kawamoto; J Herzfeld; W C Herlihy
Journal:  Proc Natl Acad Sci U S A       Date:  1981-03       Impact factor: 11.205

9.  Corrugated Waveguide and Directional Coupler for CW 250-GHz Gyrotron DNP Experiments.

Authors:  Paul P Woskov; Vikram S Bajaj; Melissa K Hornstein; Richard J Temkin; Robert G Griffin
Journal:  IEEE Trans Microw Theory Tech       Date:  2005-06       Impact factor: 3.599

10.  Nuclear magnetic resonance study of the Schiff base in bacteriorhodopsin: counterion effects on the 15N shift anisotropy.

Authors:  H J de Groot; G S Harbison; J Herzfeld; R G Griffin
Journal:  Biochemistry       Date:  1989-04-18       Impact factor: 3.162

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  83 in total

1.  Dynamic nuclear polarization-enhanced solid-state NMR spectroscopy of GNNQQNY nanocrystals and amyloid fibrils.

Authors:  Galia T Debelouchina; Marvin J Bayro; Patrick C A van der Wel; Marc A Caporini; Alexander B Barnes; Melanie Rosay; Werner E Maas; Robert G Griffin
Journal:  Phys Chem Chem Phys       Date:  2010-05-08       Impact factor: 3.676

2.  Resolution and polarization distribution in cryogenic DNP/MAS experiments.

Authors:  Alexander B Barnes; Björn Corzilius; Melody L Mak-Jurkauskas; Loren B Andreas; Vikram S Bajaj; Yoh Matsuki; Marina L Belenky; Johan Lugtenburg; Jagadishwar R Sirigiri; Richard J Temkin; Judith Herzfeld; Robert G Griffin
Journal:  Phys Chem Chem Phys       Date:  2010-05-08       Impact factor: 3.676

Review 3.  Chemical shift tensor - the heart of NMR: Insights into biological aspects of proteins.

Authors:  Hazime Saitô; Isao Ando; Ayyalusamy Ramamoorthy
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2010-05-07       Impact factor: 9.795

4.  Dynamic nuclear polarization of deuterated proteins.

Authors:  Ümit Akbey; W Trent Franks; Arne Linden; Sascha Lange; Robert G Griffin; Barth-Jan van Rossum; Hartmut Oschkinat
Journal:  Angew Chem Int Ed Engl       Date:  2010-10-11       Impact factor: 15.336

5.  Enlightening the photoactive site of channelrhodopsin-2 by DNP-enhanced solid-state NMR spectroscopy.

Authors:  Johanna Becker-Baldus; Christian Bamann; Krishna Saxena; Henrik Gustmann; Lynda J Brown; Richard C D Brown; Christian Reiter; Ernst Bamberg; Josef Wachtveitl; Harald Schwalbe; Clemens Glaubitz
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-27       Impact factor: 11.205

6.  Observation of strongly forbidden solid effect dynamic nuclear polarization transitions via electron-electron double resonance detected NMR.

Authors:  Albert A Smith; Björn Corzilius; Olesya Haze; Timothy M Swager; Robert G Griffin
Journal:  J Chem Phys       Date:  2013-12-07       Impact factor: 3.488

7.  Frequency-Swept Integrated and Stretched Solid Effect Dynamic Nuclear Polarization.

Authors:  T V Can; J E McKay; R T Weber; C Yang; T Dubroca; J van Tol; S Hill; R G Griffin
Journal:  J Phys Chem Lett       Date:  2018-06-01       Impact factor: 6.475

8.  Peptide and Protein Dynamics and Low-Temperature/DNP Magic Angle Spinning NMR.

Authors:  Qing Zhe Ni; Evgeny Markhasin; Thach V Can; Björn Corzilius; Kong Ooi Tan; Alexander B Barnes; Eugenio Daviso; Yongchao Su; Judith Herzfeld; Robert G Griffin
Journal:  J Phys Chem B       Date:  2017-05-10       Impact factor: 2.991

9.  Ramped-amplitude NOVEL.

Authors:  T V Can; R T Weber; J J Walish; T M Swager; R G Griffin
Journal:  J Chem Phys       Date:  2017-04-21       Impact factor: 3.488

10.  Electron decoupling with cross polarization and dynamic nuclear polarization below 6 K.

Authors:  Erika L Sesti; Edward P Saliba; Nicholas Alaniva; Alexander B Barnes
Journal:  J Magn Reson       Date:  2018-07-23       Impact factor: 2.229

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