Literature DB >> 18184659

Hydrophilic residues 526 KNDAAD 531 in the flexible C-terminal region of the chaperonin GroEL are critical for substrate protein folding within the central cavity.

Kodai Machida1, Akane Kono-Okada, Kunihiro Hongo, Tomohiro Mizobata, Yasushi Kawata.   

Abstract

The final 23 residues in the C-terminal region of Escherichia coli GroEL are invisible in crystallographic analyses due to high flexibility. To probe the functional role of these residues in the chaperonin mechanism, we generated and characterized C-terminal truncated, double ring, and single ring mutants of GroEL. The ability to assist the refolding of substrate proteins rhodanese and malate dehydrogenase decreased suddenly when 23 amino acids were truncated, indicating that a sudden change in the environment within the central cavity had occurred. From further experiments and analyses of the hydropathy of the C-terminal region, we focused on the hydrophilicity of the sequence region (26 KNDAAD 531 and generated two GroEL mutants where these residues were changed to a neutral hydropathy sequence (526 GGGAAG 531) and a hydrophobic sequence (526 IGIAAI 531), respectively. Very interestingly, the two mutants were found to be defective in function both in vitro and in vivo. Deterioration of function was not observed in mutants where this region was replaced by a scrambled (526 NKADDA 531) or homologous (526 RQEGGE 531) sequence, indicating that the hydrophilicity of this sequence was important. These results highlight the importance of the hydrophilic nature of 526 KNDAAD 531 residues in the flexible C-terminal region for proper protein folding within the central cavity of GroEL.

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Year:  2008        PMID: 18184659     DOI: 10.1074/jbc.M708002200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  16 in total

1.  Sequential action of ATP-dependent subunit conformational change and interaction between helical protrusions in the closure of the built-in lid of group II chaperonins.

Authors:  Taro Kanzaki; Ryo Iizuka; Kazunobu Takahashi; Kosuke Maki; Rie Masuda; Muhamad Sahlan; Hugo Yébenes; José M Valpuesta; Toshihiko Oka; Masahiro Furutani; Noriyuki Ishii; Kunihiro Kuwajima; Masafumi Yohda
Journal:  J Biol Chem       Date:  2008-10-13       Impact factor: 5.157

2.  Triggering protein folding within the GroEL-GroES complex.

Authors:  Damian Madan; Zong Lin; Hays S Rye
Journal:  J Biol Chem       Date:  2008-09-09       Impact factor: 5.157

3.  Effect of the C-terminal truncation on the functional cycle of chaperonin GroEL: implication that the C-terminal region facilitates the transition from the folding-arrested to the folding-competent state.

Authors:  Mihoko Suzuki; Taro Ueno; Ryo Iizuka; Takahiro Miura; Tamotsu Zako; Rena Akahori; Takeo Miyake; Naonobu Shimamoto; Mutsuko Aoki; Takashi Tanii; Iwao Ohdomari; Takashi Funatsu
Journal:  J Biol Chem       Date:  2008-06-26       Impact factor: 5.157

4.  Effects of C-terminal Truncation of Chaperonin GroEL on the Yield of In-cage Folding of the Green Fluorescent Protein.

Authors:  So Ishino; Yasushi Kawata; Hideki Taguchi; Naoko Kajimura; Katsumi Matsuzaki; Masaru Hoshino
Journal:  J Biol Chem       Date:  2015-04-17       Impact factor: 5.157

5.  The C-terminal tails of the bacterial chaperonin GroEL stimulate protein folding by directly altering the conformation of a substrate protein.

Authors:  Jeremy Weaver; Hays S Rye
Journal:  J Biol Chem       Date:  2014-06-25       Impact factor: 5.157

6.  Visualizing GroEL/ES in the act of encapsulating a folding protein.

Authors:  Dong-Hua Chen; Damian Madan; Jeremy Weaver; Zong Lin; Gunnar F Schröder; Wah Chiu; Hays S Rye
Journal:  Cell       Date:  2013-06-06       Impact factor: 41.582

7.  Probing the functional mechanism of Escherichia coli GroEL using circular permutation.

Authors:  Tomohiro Mizobata; Tatsuya Uemura; Kazuhiro Isaji; Takuma Hirayama; Kunihiro Hongo; Yasushi Kawata
Journal:  PLoS One       Date:  2011-10-18       Impact factor: 3.240

8.  A Mutant Chaperonin That Is Functional at Lower Temperatures Enables Hyperthermophilic Archaea To Grow under Cold-Stress Conditions.

Authors:  Le Gao; Tadayuki Imanaka; Shinsuke Fujiwara
Journal:  J Bacteriol       Date:  2015-05-26       Impact factor: 3.490

9.  Chaperonin complex with a newly folded protein encapsulated in the folding chamber.

Authors:  D K Clare; P J Bakkes; H van Heerikhuizen; S M van der Vies; H R Saibil
Journal:  Nature       Date:  2009-01-01       Impact factor: 49.962

10.  Extensive Sampling of the Cavity of the GroEL Nanomachine by Protein Substrates Probed by Paramagnetic Relaxation Enhancement.

Authors:  Marielle A Wälti; David S Libich; G Marius Clore
Journal:  J Phys Chem Lett       Date:  2018-06-07       Impact factor: 6.475

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