Literature DB >> 18166979

The fidelity of DNA synthesis by eukaryotic replicative and translesion synthesis polymerases.

Scott D McCulloch1, Thomas A Kunkel.   

Abstract

In their seminal publication describing the structure of the DNA double helix, Watson and Crick wrote what may be one of the greatest understatements in the scientific literature, namely that "It has not escaped our notice that the specific pairing we have postulated immediately suggests a possible copying mechanism for the genetic material." Half a century later, we more fully appreciate what a huge challenge it is to replicate six billion nucleotides with the accuracy needed to stably maintain the human genome over many generations. This challenge is perhaps greater than was realized 50 years ago, because subsequent studies have revealed that the genome can be destabilized not only by environmental stresses that generate a large number and variety of potentially cytotoxic and mutagenic lesions in DNA but also by various sequence motifs of normal DNA that present challenges to replication. Towards a better understanding of the many determinants of genome stability, this chapter reviews the fidelity with which undamaged and damaged DNA is copied, with a focus on the eukaryotic B- and Y-family DNA polymerases, and considers how this fidelity is achieved.

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Year:  2008        PMID: 18166979      PMCID: PMC3639319          DOI: 10.1038/cr.2008.4

Source DB:  PubMed          Journal:  Cell Res        ISSN: 1001-0602            Impact factor:   25.617


  130 in total

1.  Defective DNA polymerase-delta proofreading causes cancer susceptibility in mice.

Authors:  R E Goldsby; N A Lawrence; L E Hays; E A Olmsted; X Chen; M Singh; B D Preston
Journal:  Nat Med       Date:  2001-06       Impact factor: 53.440

Review 2.  Mutator phenotype may be required for multistage carcinogenesis.

Authors:  L A Loeb
Journal:  Cancer Res       Date:  1991-06-15       Impact factor: 12.701

3.  Fidelity of DNA polymerase I and the DNA polymerase I-DNA primase complex from Saccharomyces cerevisiae.

Authors:  T A Kunkel; R K Hamatake; J Motto-Fox; M P Fitzgerald; A Sugino
Journal:  Mol Cell Biol       Date:  1989-10       Impact factor: 4.272

4.  The 3'-->5' exonuclease of DNA polymerase delta can substitute for the 5' flap endonuclease Rad27/Fen1 in processing Okazaki fragments and preventing genome instability.

Authors:  Y H Jin; R Obert; P M Burgers; T A Kunkel; M A Resnick; D A Gordenin
Journal:  Proc Natl Acad Sci U S A       Date:  2001-04-17       Impact factor: 11.205

5.  DNA polymerase zeta introduces multiple mutations when bypassing spontaneous DNA damage in Saccharomyces cerevisiae.

Authors:  B D Harfe; S Jinks-Robertson
Journal:  Mol Cell       Date:  2000-12       Impact factor: 17.970

6.  Disruption of the Rev3l-encoded catalytic subunit of polymerase zeta in mice results in early embryonic lethality.

Authors:  G Esposito; I Godindagger; U Klein; M L Yaspo; A Cumano; K Rajewsky
Journal:  Curr Biol       Date:  2000-10-05       Impact factor: 10.834

7.  Disruption of the developmentally regulated Rev3l gene causes embryonic lethality.

Authors:  J Wittschieben; M K Shivji; E Lalani; M A Jacobs; F Marini; P J Gearhart; I Rosewell; G Stamp; R D Wood
Journal:  Curr Biol       Date:  2000-10-05       Impact factor: 10.834

8.  5'-Deoxyribose phosphate lyase activity of human DNA polymerase iota in vitro.

Authors:  K Bebenek; A Tissier; E G Frank; J P McDonald; R Prasad; S H Wilson; R Woodgate; T A Kunkel
Journal:  Science       Date:  2001-03-16       Impact factor: 47.728

9.  Fidelity of nucleotide insertion at 8-oxo-7,8-dihydroguanine by mammalian DNA polymerase delta. Steady-state and pre-steady-state kinetic analysis.

Authors:  H J Einolf; F P Guengerich
Journal:  J Biol Chem       Date:  2000-11-10       Impact factor: 5.157

10.  Fidelity and processivity of DNA synthesis by DNA polymerase kappa, the product of the human DINB1 gene.

Authors:  E Ohashi; K Bebenek; T Matsuda; W J Feaver; V L Gerlach; E C Friedberg; H Ohmori; T A Kunkel
Journal:  J Biol Chem       Date:  2000-12-15       Impact factor: 5.157

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  231 in total

Review 1.  DNA replication fidelity in Escherichia coli: a multi-DNA polymerase affair.

Authors:  Iwona J Fijalkowska; Roel M Schaaper; Piotr Jonczyk
Journal:  FEMS Microbiol Rev       Date:  2012-04-05       Impact factor: 16.408

2.  AFB(1) -induced mutagenesis of the gpt gene in AS52 cells.

Authors:  Roongtiwa Wattanawaraporn; Min Young Kim; Jillian Adams; Laura J Trudel; Leslie L Woo; Robert G Croy; John M Essigmann; Gerald N Wogan
Journal:  Environ Mol Mutagen       Date:  2012-06-26       Impact factor: 3.216

3.  The mutational spectrum of non-CpG DNA varies with CpG content.

Authors:  Jean-Claude Walser; Anthony V Furano
Journal:  Genome Res       Date:  2010-05-24       Impact factor: 9.043

4.  The SMC-like protein complex SbcCD enhances DNA polymerase IV-dependent spontaneous mutation in Escherichia coli.

Authors:  Kimberly A M Storvik; Patricia L Foster
Journal:  J Bacteriol       Date:  2010-12-03       Impact factor: 3.490

5.  Pre-steady-state kinetic analysis of the incorporation of anti-HIV nucleotide analogs catalyzed by human X- and Y-family DNA polymerases.

Authors:  Jessica A Brown; Lindsey R Pack; Jason D Fowler; Zucai Suo
Journal:  Antimicrob Agents Chemother       Date:  2010-11-15       Impact factor: 5.191

6.  Structural factors that determine selectivity of a high fidelity DNA polymerase for deoxy-, dideoxy-, and ribonucleotides.

Authors:  Weina Wang; Eugene Y Wu; Homme W Hellinga; Lorena S Beese
Journal:  J Biol Chem       Date:  2012-05-30       Impact factor: 5.157

7.  The use of modified and non-natural nucleotides provide unique insights into pro-mutagenic replication catalyzed by polymerase eta.

Authors:  Jung-Suk Choi; Anvesh Dasari; Peter Hu; Stephen J Benkovic; Anthony J Berdis
Journal:  Nucleic Acids Res       Date:  2015-12-29       Impact factor: 16.971

8.  Accommodation of an N-(deoxyguanosin-8-yl)-2-acetylaminofluorene adduct in the active site of human DNA polymerase iota: Hoogsteen or Watson-Crick base pairing?

Authors:  Kerry Donny-Clark; Robert Shapiro; Suse Broyde
Journal:  Biochemistry       Date:  2009-01-13       Impact factor: 3.162

9.  Dual role for mammalian DNA polymerase ζ in maintaining genome stability and proliferative responses.

Authors:  Sabine S Lange; Ella Bedford; Shelley Reh; John P Wittschieben; Steve Carbajal; Donna F Kusewitt; John DiGiovanni; Richard D Wood
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-05       Impact factor: 11.205

Review 10.  Directed polymerase evolution.

Authors:  Tingjian Chen; Floyd E Romesberg
Journal:  FEBS Lett       Date:  2013-11-05       Impact factor: 4.124

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