Literature DB >> 18096902

Automatic classification of foot examination findings using clinical notes and machine learning.

Serguei V S Pakhomov1, Penny L Hanson, Susan S Bjornsen, Steven A Smith.   

Abstract

We examine the feasibility of a machine learning approach to identification of foot examination (FE) findings from the unstructured text of clinical reports. A Support Vector Machine (SVM) based system was constructed to process the text of physical examination sections of in- and out-patient clinical notes to identify if the findings of structural, neurological, and vascular components of a FE revealed normal or abnormal findings or were not assessed. The system was tested on 145 randomly selected patients for each FE component using 10-fold cross validation. The accuracy was 80%, 87% and 88% for structural, neurological, and vascular component classifiers, respectively. Our results indicate that using machine learning to identify FE findings from clinical reports is a viable alternative to manual review and warrants further investigation. This application may improve quality and safety by providing inexpensive and scalable methodology for quality and risk factor assessments at the point of care.

Entities:  

Mesh:

Year:  2007        PMID: 18096902      PMCID: PMC2274799          DOI: 10.1197/jamia.M2585

Source DB:  PubMed          Journal:  J Am Med Inform Assoc        ISSN: 1067-5027            Impact factor:   4.497


  27 in total

1.  Text categorization models for high-quality article retrieval in internal medicine.

Authors:  Yindalon Aphinyanaphongs; Ioannis Tsamardinos; Alexander Statnikov; Douglas Hardin; Constantin F Aliferis
Journal:  J Am Med Inform Assoc       Date:  2004-11-23       Impact factor: 4.497

2.  Predicting the adoption of electronic health records by physicians: when will health care be paperless?

Authors:  Eric W Ford; Nir Menachemi; M Thad Phillips
Journal:  J Am Med Inform Assoc       Date:  2005-10-12       Impact factor: 4.497

3.  Automated detection of adverse events using natural language processing of discharge summaries.

Authors:  Genevieve B Melton; George Hripcsak
Journal:  J Am Med Inform Assoc       Date:  2005-03-31       Impact factor: 4.497

4.  Trends in care practices and outcomes among Medicare beneficiaries with diabetes.

Authors:  Sylvia Kuo; Barbara B Fleming; Neil S Gittings; Lein F Han; Linda S Geiss; Michael M Engelgau; Sheila H Roman
Journal:  Am J Prev Med       Date:  2005-12       Impact factor: 5.043

5.  Assessing adherence to the evidence base in the management of poststroke dysphagia.

Authors:  Christopher Burton; Lindsay Pennington; Hazel Roddam; Ian Russell; Daphne Russell; Karen Krawczyk; Hilary A Smith
Journal:  Clin Rehabil       Date:  2006-01       Impact factor: 3.477

6.  Natural language processing in the electronic medical record: assessing clinician adherence to tobacco treatment guidelines.

Authors:  Brian Hazlehurst; Dean F Sittig; Victor J Stevens; K Sabina Smith; Jack F Hollis; Thomas M Vogt; Jonathan P Winickoff; Russ Glasgow; Ted E Palen; Nancy A Rigotti
Journal:  Am J Prev Med       Date:  2005-12       Impact factor: 5.043

Review 7.  Natural language processing and the representation of clinical data.

Authors:  N Sager; M Lyman; C Bucknall; N Nhan; L J Tick
Journal:  J Am Med Inform Assoc       Date:  1994 Mar-Apr       Impact factor: 4.497

8.  The association between quality of care and the intensity of diabetes disease management programs.

Authors:  Carol M Mangione; Robert B Gerzoff; David F Williamson; W Neil Steers; Eve A Kerr; Arleen F Brown; Beth E Waitzfelder; David G Marrero; R Adams Dudley; Catherine Kim; William Herman; Theodore J Thompson; Monika M Safford; Joe V Selby
Journal:  Ann Intern Med       Date:  2006-07-18       Impact factor: 25.391

9.  Improvements in diabetes processes of care and intermediate outcomes: United States, 1988-2002.

Authors:  Jinan B Saaddine; Betsy Cadwell; Edward W Gregg; Michael M Engelgau; Frank Vinicor; Giuseppina Imperatore; K M Venkat Narayan
Journal:  Ann Intern Med       Date:  2006-04-04       Impact factor: 25.391

10.  The impact of a staged management approach to diabetes foot care in the Louisiana public hospital system.

Authors:  James A Birke; Ronald Horswell; Charles A Patout; Sharley L Chen
Journal:  J La State Med Soc       Date:  2003 Jan-Feb
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  11 in total

1.  Quantitative analysis of ontology research articles in the radiologic domain.

Authors:  Naoki Nishimoto; Ayako Yagahara; Yuki Yokooka; Shintaro Tsuji; Masahito Uesugi; Katsuhiko Ogasawara; Masaji Maezawa
Journal:  Radiol Phys Technol       Date:  2010-05-22

2.  The Influence of Big (Clinical) Data and Genomics on Precision Medicine and Drug Development.

Authors:  Joshua C Denny; Sara L Van Driest; Wei-Qi Wei; Dan M Roden
Journal:  Clin Pharmacol Ther       Date:  2018-02-05       Impact factor: 6.875

3.  Classifying clinical notes with pain assessment using machine learning.

Authors:  Samah Jamal Fodeh; Dezon Finch; Lina Bouayad; Stephen L Luther; Han Ling; Robert D Kerns; Cynthia Brandt
Journal:  Med Biol Eng Comput       Date:  2017-12-26       Impact factor: 2.602

4.  The role of the electronic medical record in the assessment of health related quality of life.

Authors:  Serguei V S Pakhomov; Nilay D Shah; Holly K Van Houten; Penny L Hanson; Steven A Smith
Journal:  AMIA Annu Symp Proc       Date:  2011-10-22

5.  Finding falls in ambulatory care clinical documents using statistical text mining.

Authors:  James A McCart; Donald J Berndt; Jay Jarman; Dezon K Finch; Stephen L Luther
Journal:  J Am Med Inform Assoc       Date:  2012-12-15       Impact factor: 4.497

6.  Using information from the electronic health record to improve measurement of unemployment in service members and veterans with mTBI and post-deployment stress.

Authors:  Christina Dillahunt-Aspillaga; Dezon Finch; Jill Massengale; Tracy Kretzmer; Stephen L Luther; James A McCart
Journal:  PLoS One       Date:  2014-12-26       Impact factor: 3.240

7.  Leveraging Electronic Health Care Record Information to Measure Pressure Ulcer Risk in Veterans With Spinal Cord Injury: A Longitudinal Study Protocol.

Authors:  Stephen L Luther; Susan S Thomason; Sunil Sabharwal; Dezon K Finch; James McCart; Peter Toyinbo; Lina Bouayad; Michael E Matheny; Glenn T Gobbel; Gail Powell-Cope
Journal:  JMIR Res Protoc       Date:  2017-01-19

8.  Identification of the delivery of cognitive behavioural therapy for psychosis (CBTp) using a cross-sectional sample from electronic health records and open-text information in a large UK-based mental health case register.

Authors:  Craig Colling; Lauren Evans; Matthew Broadbent; David Chandran; Thomas J Craig; Anna Kolliakou; Robert Stewart; Philippa A Garety
Journal:  BMJ Open       Date:  2017-07-17       Impact factor: 2.692

Review 9.  Natural Language Processing of Clinical Notes on Chronic Diseases: Systematic Review.

Authors:  Seyedmostafa Sheikhalishahi; Riccardo Miotto; Joel T Dudley; Alberto Lavelli; Fabio Rinaldi; Venet Osmani
Journal:  JMIR Med Inform       Date:  2019-04-27

10.  Cohort profile of the South London and Maudsley NHS Foundation Trust Biomedical Research Centre (SLaM BRC) Case Register: current status and recent enhancement of an Electronic Mental Health Record-derived data resource.

Authors:  Gayan Perera; Matthew Broadbent; Felicity Callard; Chin-Kuo Chang; Johnny Downs; Rina Dutta; Andrea Fernandes; Richard D Hayes; Max Henderson; Richard Jackson; Amelia Jewell; Giouliana Kadra; Ryan Little; Megan Pritchard; Hitesh Shetty; Alex Tulloch; Robert Stewart
Journal:  BMJ Open       Date:  2016-03-01       Impact factor: 2.692

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