Literature DB >> 20821092

Quantitative analysis of ontology research articles in the radiologic domain.

Naoki Nishimoto1, Ayako Yagahara, Yuki Yokooka, Shintaro Tsuji, Masahito Uesugi, Katsuhiko Ogasawara, Masaji Maezawa.   

Abstract

To investigate the most advanced ontology research in health care and its impact on the radiologic domain, we proposed a concept identification and abstraction technique called "Concept Step". This technique identifies a MeSH term, medical subject headings used in PubMed, in a sentence and climbs up through its hierarchy to reach an abstract concept. We developed original Java software to implement this technique. We tested it on 2,774 abstracts in health-care ontology research retrieved from MEDLINE on 23 October 2008. The total number of MeSH terms was 112,690. We counted a total of 33 MeSH terms (0.029%) in the radiologic domain. The most frequently occurring term was "radiology", which occurred 21 times in the article set. Other frequent terms were "magnetic resonance imaging" and "tomography", the counts of which were 4 and 3, respectively. A pair plot showed no correlation among the MeSH categories "Analytical Diagnostic and Therapeutic Techniques and Equipment", "Anatomy", "Biological Sciences", and "Chemicals and Drugs". We conclude that ontology research is well established in the biomedical domain, and that further study is required in the radiologic domain.

Mesh:

Year:  2010        PMID: 20821092     DOI: 10.1007/s12194-010-0094-x

Source DB:  PubMed          Journal:  Radiol Phys Technol        ISSN: 1865-0333


  18 in total

1.  The Unified Medical Language System (UMLS): integrating biomedical terminology.

Authors:  Olivier Bodenreider
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  Using compound codes for automatic classification of clinical diagnoses.

Authors:  Serguei V Pakhomov; James D Buntrock; Christopher G Chute
Journal:  Stud Health Technol Inform       Date:  2004

3.  Generating XML schemas for DICOM structured reporting templates.

Authors:  Luyin Zhao; Kwok Pun Lee; Jingkun Hu
Journal:  J Am Med Inform Assoc       Date:  2004-10-18       Impact factor: 4.497

4.  Biomedical ontologies.

Authors:  O Bodenreider; J A Mitchell; A T McCray
Journal:  Pac Symp Biocomput       Date:  2005

5.  Indexing thoracic CT reports using a preliminary version of a standardized radiological lexicon (RadLex).

Authors:  Dirk Marwede; Thomas Schulz; Thomas Kahn
Journal:  J Digit Imaging       Date:  2007-07-28       Impact factor: 4.056

6.  The IR RadLex project: an interventional radiology lexicon--a collaborative project of the Radiological Society of North America and the Society of Interventional Radiology.

Authors:  Sanjoy Kundu; Maxim Itkin; Debra A Gervais; Venkataramu N Krishnamurthy; Michael J Wallace; John F Cardella; Daniel L Rubin; Curtis P Langlotz
Journal:  J Vasc Interv Radiol       Date:  2008-12-11       Impact factor: 3.464

7.  Methods for building sense inventories of abbreviations in clinical notes.

Authors:  Hua Xu; Peter D Stetson; Carol Friedman
Journal:  J Am Med Inform Assoc       Date:  2008-10-24       Impact factor: 4.497

8.  Word sense disambiguation across two domains: biomedical literature and clinical notes.

Authors:  Guergana K Savova; Anni R Coden; Igor L Sominsky; Rie Johnson; Philip V Ogren; Piet C de Groen; Christopher G Chute
Journal:  J Biomed Inform       Date:  2008-03-04       Impact factor: 6.317

9.  XML Schema Representation of DICOM Structured Reporting.

Authors:  K P Lee; Jingkun Hu
Journal:  J Am Med Inform Assoc       Date:  2003 Mar-Apr       Impact factor: 4.497

10.  Automatic classification of foot examination findings using clinical notes and machine learning.

Authors:  Serguei V S Pakhomov; Penny L Hanson; Susan S Bjornsen; Steven A Smith
Journal:  J Am Med Inform Assoc       Date:  2007-12-20       Impact factor: 4.497

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  1 in total

1.  Workflow Lexicons in Healthcare: Validation of the SWIM Lexicon.

Authors:  Chris Meenan; Bradley Erickson; Nancy Knight; Jewel Fossett; Elizabeth Olsen; Prerna Mohod; Joseph Chen; Steve G Langer
Journal:  J Digit Imaging       Date:  2017-06       Impact factor: 4.056

  1 in total

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