Literature DB >> 18093950

Chemical mimicry of viral capsid self-assembly.

Arthur J Olson1, Yunfeng H E Hu, Ehud Keinan.   

Abstract

Stable structures of icosahedral symmetry can serve numerous functional roles, including chemical microencapsulation and delivery of drugs and biomolecules, epitope presentation to allow for an efficient immunization process, synthesis of nanoparticles of uniform size, observation of encapsulated reactive intermediates, formation of structural elements for supramolecular constructs, and molecular computing. By examining physical models of spherical virus assembly we have arrived at a general synthetic strategy for producing chemical capsids at size scales between fullerenes and spherical viruses. Such capsids can be formed by self-assembly from a class of molecules developed from a symmetric pentagonal core. By designing chemical complementarity into the five interface edges of the molecule, we can produce self-assembling stable structures of icosahedral symmetry. We considered three different binding mechanisms: hydrogen bonding, metal binding, and formation of disulfide bonds. These structures can be designed to assemble and disassemble under controlled environmental conditions. We have conducted molecular dynamics simulation on a class of corannulene-based molecules to demonstrate the characteristics of self-assembly and to aid in the design of the molecular subunits. The edge complementarities can be of diverse structure, and they need not reflect the fivefold symmetry of the molecular core. Thus, self-assembling capsids formed from coded subunits can serve as addressable nanocontainers or custom-made structural elements.

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Year:  2007        PMID: 18093950      PMCID: PMC2410070          DOI: 10.1073/pnas.0709489104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  22 in total

1.  Structure/energy correlation of bowl depth and inversion barrier in corannulene derivatives: combined experimental and quantum mechanical analysis.

Authors:  T J Seiders; K K Baldridge; G H Grube; J S Siegel
Journal:  J Am Chem Soc       Date:  2001-01-31       Impact factor: 15.419

2.  Self-assembly of discrete cyclic nanostructures mediated by transition metals.

Authors:  S Leininger; B Olenyuk; P J Stang
Journal:  Chem Rev       Date:  2000-03-08       Impact factor: 60.622

3.  Template-Directed Synthesis of a

Authors:  Peter T. Glink; Ana I. Oliva; J. Fraser Stoddart; Andrew J. P. White; David J. Williams
Journal:  Angew Chem Int Ed Engl       Date:  2001-05-18       Impact factor: 15.336

4.  Archimedean Synthesis and Magic Numbers: "Sizing" Giant Molybdenum-Oxide-Based Molecular Spheres of the Keplerate Type.

Authors: 
Journal:  Angew Chem Int Ed Engl       Date:  1999-11-02       Impact factor: 15.336

5.  Structure of small viruses.

Authors:  F H CRICK; J D WATSON
Journal:  Nature       Date:  1956-03-10       Impact factor: 49.962

6.  Polyhedra in (inorganic) chemistry.

Authors:  Santiago Alvarez
Journal:  Dalton Trans       Date:  2005-06-09       Impact factor: 4.390

7.  Three-dimensional structure of poliovirus at 2.9 A resolution.

Authors:  J M Hogle; M Chow; D J Filman
Journal:  Science       Date:  1985-09-27       Impact factor: 47.728

8.  Supramolecular blueprint approach to metal-coordinated capsules.

Authors:  Robert M McKinlay; Gareth W V Cave; Jerry L Atwood
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-14       Impact factor: 11.205

9.  X-ray quality geometries of geodesic polyarenes from theoretical calculations: what levels of theory are reliable?

Authors:  Marina A Petrukhina; Kristian W Andreini; James Mack; Lawrence T Scott
Journal:  J Org Chem       Date:  2005-07-08       Impact factor: 4.354

10.  Sulfonatocalixarenes: molecular capsule and 'Russian doll' arrays to structures mimicking viral geometry.

Authors:  Scott J Dalgarno; Jerry L Atwood; Colin L Raston
Journal:  Chem Commun (Camb)       Date:  2006-09-04       Impact factor: 6.222

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  18 in total

Review 1.  Ten reasons to exclude viruses from the tree of life.

Authors:  David Moreira; Purificación López-García
Journal:  Nat Rev Microbiol       Date:  2009-03-09       Impact factor: 60.633

2.  Spatially dependent H-bond dynamics at interfaces of water/biomimetic self-assembled lattice materials.

Authors:  Haoyuan Wang; Jackson C Wagner; Wenfan Chen; Chenglai Wang; Wei Xiong
Journal:  Proc Natl Acad Sci U S A       Date:  2020-09-09       Impact factor: 11.205

3.  A Self-Assisting Protein Folding Model for Teaching Structural Molecular Biology.

Authors:  Jodi Davenport; Michael Pique; Elizabeth Getzoff; Jon Huntoon; Adam Gardner; Arthur Olson
Journal:  Structure       Date:  2017-04-04       Impact factor: 5.006

4.  Synthesis and X-ray structural analysis of platinum and ethynyl-platinum corannulenes: supramolecular tectons.

Authors:  Roman Maag; Brian H Northrop; Anna Butterfield; Anthony Linden; Oliver Zerbe; Young Min Lee; Ki-Whan Chi; Peter J Stang; Jay S Siegel
Journal:  Org Biomol Chem       Date:  2009-10-05       Impact factor: 3.876

Review 5.  Perspectives on Structural Molecular Biology Visualization: From Past to Present.

Authors:  Arthur J Olson
Journal:  J Mol Biol       Date:  2018-07-23       Impact factor: 5.469

Review 6.  RNA-Mediated Virus Assembly: Mechanisms and Consequences for Viral Evolution and Therapy.

Authors:  Reidun Twarock; Peter G Stockley
Journal:  Annu Rev Biophys       Date:  2019-04-05       Impact factor: 12.981

7.  Student learning about biomolecular self-assembly using two different external representations.

Authors:  Gunnar E Höst; Caroline Larsson; Arthur Olson; Lena A E Tibell
Journal:  CBE Life Sci Educ       Date:  2013       Impact factor: 3.325

8.  Syntheses and self-assembling behaviors of pentagonal conjugates of tryptophane zipper-forming peptide.

Authors:  Kazunori Matsuura; Kazuya Murasato; Nobuo Kimizuka
Journal:  Int J Mol Sci       Date:  2011-08-15       Impact factor: 5.923

9.  Meshing complex macro-scale objects into self-assembling bricks.

Authors:  Adar Hacohen; Iddo Hanniel; Yasha Nikulshin; Shuki Wolfus; Almogit Abu-Horowitz; Ido Bachelet
Journal:  Sci Rep       Date:  2015-07-30       Impact factor: 4.379

10.  Crystallographic education in the 21st century.

Authors:  Saulius Gražulis; Amy Alexis Sarjeant; Peter Moeck; Jennifer Stone-Sundberg; Trevor J Snyder; Werner Kaminsky; Allen G Oliver; Charlotte L Stern; Louise N Dawe; Denis A Rychkov; Evgeniy A Losev; Elena V Boldyreva; Joseph M Tanski; Joel Bernstein; Wael M Rabeh; Katherine A Kantardjieff
Journal:  J Appl Crystallogr       Date:  2015-10-13       Impact factor: 3.304

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