Literature DB >> 18086879

Slx5 promotes transcriptional silencing and is required for robust growth in the absence of Sir2.

Russell P Darst1, Sandra N Garcia, Melissa R Koch, Lorraine Pillus.   

Abstract

The broadly conserved Sir2 NAD(+)-dependent deacetylase is required for chromatin silencing. Here we report the discovery of physical and functional links between Sir2 and Slx5 (Hex3), a RING domain protein and subunit of the Slx5/8 complex, [corrected] which is a ubiquitin E3 ligase that targets sumoylated proteins. Slx5 interacted with Sir2 by two-hybrid and glutathione S-transferase-binding assays and was found to promote silencing of genes at telomeric or ribosomal DNA (rDNA) loci. However, deletion of SLX5 had no detectable effect on the distribution of silent chromatin components and only slightly altered the deacetylation of histone H4 lysine 16 at the telomere. In vivo assays indicated that Sir2-dependent silencing was functionally intact in the absence of Slx5. Although no previous reports suggest that Sir2 contributes to the fitness of yeast populations, we found that Sir2 was required for maximal growth in slx5Delta mutant cells. A similar requirement was observed for mutants of the SUMO isopeptidase Ulp2/Smt4. The contribution of Sir2 to optimal growth was not due to known Sir2 roles in mating-type determination or rDNA maintenance but was connected to a role of sumoylation in transcriptional silencing. These results indicate that Sir2 and Slx5 jointly contribute to transcriptional silencing and robust cellular growth.

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Year:  2007        PMID: 18086879      PMCID: PMC2258744          DOI: 10.1128/MCB.01291-07

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  77 in total

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Review 4.  SUMO: a history of modification.

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5.  Maintenance of low histone ubiquitylation by Ubp10 correlates with telomere-proximal Sir2 association and gene silencing.

Authors:  N C Tolga Emre; Kristin Ingvarsdottir; Anastasia Wyce; Adam Wood; Nevan J Krogan; Karl W Henry; Keqin Li; Ronen Marmorstein; Jack F Greenblatt; Ali Shilatifard; Shelley L Berger
Journal:  Mol Cell       Date:  2005-02-18       Impact factor: 17.970

6.  Role of yeast SIR genes and mating type in directing DNA double-strand breaks to homologous and non-homologous repair paths.

Authors:  S E Lee; F Pâques; J Sylvan; J E Haber
Journal:  Curr Biol       Date:  1999-07-15       Impact factor: 10.834

7.  Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis.

Authors:  E A Winzeler; D D Shoemaker; A Astromoff; H Liang; K Anderson; B Andre; R Bangham; R Benito; J D Boeke; H Bussey; A M Chu; C Connelly; K Davis; F Dietrich; S W Dow; M El Bakkoury; F Foury; S H Friend; E Gentalen; G Giaever; J H Hegemann; T Jones; M Laub; H Liao; N Liebundguth; D J Lockhart; A Lucau-Danila; M Lussier; N M'Rabet; P Menard; M Mittmann; C Pai; C Rebischung; J L Revuelta; L Riles; C J Roberts; P Ross-MacDonald; B Scherens; M Snyder; S Sookhai-Mahadeo; R K Storms; S Véronneau; M Voet; G Volckaert; T R Ward; R Wysocki; G S Yen; K Yu; K Zimmermann; P Philippsen; M Johnston; R W Davis
Journal:  Science       Date:  1999-08-06       Impact factor: 47.728

8.  A nonhistone protein-protein interaction required for assembly of the SIR complex and silent chromatin.

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Journal:  Mol Cell Biol       Date:  2005-06       Impact factor: 4.272

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10.  A proteomic strategy for gaining insights into protein sumoylation in yeast.

Authors:  Carilee Denison; Adam D Rudner; Scott A Gerber; Corey E Bakalarski; Danesh Moazed; Steven P Gygi
Journal:  Mol Cell Proteomics       Date:  2004-11-12       Impact factor: 5.911

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  21 in total

1.  Genetic analysis implicates the Set3/Hos2 histone deacetylase in the deposition and remodeling of nucleosomes containing H2A.Z.

Authors:  Mingda Hang; M Mitchell Smith
Journal:  Genetics       Date:  2011-02-01       Impact factor: 4.562

2.  Topoisomerase II mediates meiotic crossover interference.

Authors:  Liangran Zhang; Shunxin Wang; Shen Yin; Soogil Hong; Keun P Kim; Nancy Kleckner
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3.  RING domain dimerization is essential for RNF4 function.

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Journal:  Biochem J       Date:  2010-10-01       Impact factor: 3.857

4.  The SUMO E3 ligase Siz2 exerts a locus-dependent effect on gene silencing in Saccharomyces cerevisiae.

Authors:  Nagesh Pasupala; Sreesankar Easwaran; Abdul Hannan; David Shore; Krishnaveni Mishra
Journal:  Eukaryot Cell       Date:  2012-02-17

Review 5.  Genome stability roles of SUMO-targeted ubiquitin ligases.

Authors:  J Heideker; J J P Perry; M N Boddy
Journal:  DNA Repair (Amst)       Date:  2009-02-23

Review 6.  SUMO: a multifaceted modifier of chromatin structure and function.

Authors:  Caelin Cubeñas-Potts; Michael J Matunis
Journal:  Dev Cell       Date:  2013-01-14       Impact factor: 12.270

7.  The SUMO-targeted ubiquitin ligase subunit Slx5 resides in nuclear foci and at sites of DNA breaks.

Authors:  Caitlin E Cook; Mark Hochstrasser; Oliver Kerscher
Journal:  Cell Cycle       Date:  2009-04-09       Impact factor: 4.534

8.  Essential role of nuclear localization for yeast Ulp2 SUMO protease function.

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9.  Functions for diverse metabolic activities in heterochromatin.

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Review 10.  STUbLs in chromatin and genome stability.

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Journal:  Biopolymers       Date:  2013-02       Impact factor: 2.505

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