Literature DB >> 18084299

Vector and parameters for targeted transgenic RNA interference in Drosophila melanogaster.

Jian-Quan Ni1, Michele Markstein, Richard Binari, Barret Pfeiffer, Lu-Ping Liu, Christians Villalta, Matthew Booker, Lizabeth Perkins, Norbert Perrimon.   

Abstract

The conditional expression of hairpin constructs in Drosophila melanogaster has emerged in recent years as a method of choice in functional genomic studies. To date, upstream activating site-driven RNA interference constructs have been inserted into the genome randomly using P-element-mediated transformation, which can result in false negatives due to variable expression. To avoid this problem, we have developed a transgenic RNA interference vector based on the phiC31 site-specific integration method.

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Year:  2007        PMID: 18084299      PMCID: PMC2290002          DOI: 10.1038/nmeth1146

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  11 in total

1.  Transgene-mediated RNA interference defines a novel role for notch in chemosensory startle behavior.

Authors:  Asaf Presente; Susan Shaw; Jeffrey S Nye; Andrew J Andres
Journal:  Genesis       Date:  2002 Sep-Oct       Impact factor: 2.487

Review 2.  Applications of high-throughput RNA interference screens to problems in cell and developmental biology.

Authors:  Norbert Perrimon; Bernard Mathey-Prevot
Journal:  Genetics       Date:  2007-01       Impact factor: 4.562

3.  Design and isolation of temperature-sensitive mutants of Gal4 in yeast and Drosophila.

Authors:  Kajari Mondal; Antara Ghosh Dastidar; Guramrit Singh; S Madhusudhanan; Santosh Lakshmi Gande; K VijayRaghavan; Raghavan Varadarajan
Journal:  J Mol Biol       Date:  2007-05-18       Impact factor: 5.469

4.  Vermilion as a small selectable marker gene for Drosophila transformation.

Authors:  Y W Fridell; L L Searles
Journal:  Nucleic Acids Res       Date:  1991-09-25       Impact factor: 16.971

5.  Distinct expression patterns detected within individual tissues by the GAL4 enhancer trap technique.

Authors:  K Gustafson; G L Boulianne
Journal:  Genome       Date:  1996-02       Impact factor: 2.166

6.  Transgene Coplacement and high efficiency site-specific recombination with the Cre/loxP system in Drosophila.

Authors:  M L Siegal; D L Hartl
Journal:  Genetics       Date:  1996-10       Impact factor: 4.562

7.  The effects of ectopic white and transformer expression on Drosophila courtship behavior.

Authors:  X An; J D Armstrong; K Kaiser; K M O'Dell
Journal:  J Neurogenet       Date:  2000-12       Impact factor: 1.250

8.  Construction of transgenic Drosophila by using the site-specific integrase from phage phiC31.

Authors:  Amy C Groth; Matthew Fish; Roel Nusse; Michele P Calos
Journal:  Genetics       Date:  2004-04       Impact factor: 4.562

9.  A genome-wide transgenic RNAi library for conditional gene inactivation in Drosophila.

Authors:  Georg Dietzl; Doris Chen; Frank Schnorrer; Kuan-Chung Su; Yulia Barinova; Michaela Fellner; Beate Gasser; Kaolin Kinsey; Silvia Oppel; Susanne Scheiblauer; Africa Couto; Vincent Marra; Krystyna Keleman; Barry J Dickson
Journal:  Nature       Date:  2007-07-12       Impact factor: 49.962

10.  Targeted gene expression as a means of altering cell fates and generating dominant phenotypes.

Authors:  A H Brand; N Perrimon
Journal:  Development       Date:  1993-06       Impact factor: 6.868

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  148 in total

1.  Drosophila melanogaster heterochromatin protein HP1b plays important roles in transcriptional activation and development.

Authors:  Daoyong Zhang; Daliang Wang; Fanglin Sun
Journal:  Chromosoma       Date:  2010-09-21       Impact factor: 4.316

Review 2.  In vivo RNAi: today and tomorrow.

Authors:  Norbert Perrimon; Jian-Quan Ni; Lizabeth Perkins
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-06-09       Impact factor: 10.005

3.  The receptor tyrosine kinase Pvr promotes tissue closure by coordinating corpse removal and epidermal zippering.

Authors:  Rebecca A Garlena; Ashley L Lennox; Lewis R Baker; Trish E Parsons; Seth M Weinberg; Beth E Stronach
Journal:  Development       Date:  2015-08-20       Impact factor: 6.868

4.  The Transgenic RNAi Project at Harvard Medical School: Resources and Validation.

Authors:  Lizabeth A Perkins; Laura Holderbaum; Rong Tao; Yanhui Hu; Richelle Sopko; Kim McCall; Donghui Yang-Zhou; Ian Flockhart; Richard Binari; Hye-Seok Shim; Audrey Miller; Amy Housden; Marianna Foos; Sakara Randkelv; Colleen Kelley; Pema Namgyal; Christians Villalta; Lu-Ping Liu; Xia Jiang; Qiao Huan-Huan; Xia Wang; Asao Fujiyama; Atsushi Toyoda; Kathleen Ayers; Allison Blum; Benjamin Czech; Ralph Neumuller; Dong Yan; Amanda Cavallaro; Karen Hibbard; Don Hall; Lynn Cooley; Gregory J Hannon; Ruth Lehmann; Annette Parks; Stephanie E Mohr; Ryu Ueda; Shu Kondo; Jian-Quan Ni; Norbert Perrimon
Journal:  Genetics       Date:  2015-08-28       Impact factor: 4.562

5.  TRiP stocks contain a previously uncharacterized loss-of-function sevenless allele.

Authors:  Spencer Escobedo; Jonathan Zirin; Vikki Weake
Journal:  MicroPubl Biol       Date:  2019-04-04

6.  BMP-regulated exosomes from Drosophila male reproductive glands reprogram female behavior.

Authors:  Laura Corrigan; Siamak Redhai; Aaron Leiblich; Shih-Jung Fan; Sumeth M W Perera; Rachel Patel; Carina Gandy; S Mark Wainwright; John F Morris; Freddie Hamdy; Deborah C I Goberdhan; Clive Wilson
Journal:  J Cell Biol       Date:  2014-08-25       Impact factor: 10.539

Review 7.  Drosophila RNAi screening in a postgenomic world.

Authors:  Chris Bakal
Journal:  Brief Funct Genomics       Date:  2011-07-12       Impact factor: 4.241

8.  A Drosophila resource of transgenic RNAi lines for neurogenetics.

Authors:  Jian-Quan Ni; Lu-Ping Liu; Richard Binari; Robert Hardy; Hye-Seok Shim; Amanda Cavallaro; Matthew Booker; Barret D Pfeiffer; Michele Markstein; Hui Wang; Christians Villalta; Todd R Laverty; Lizabeth A Perkins; Norbert Perrimon
Journal:  Genetics       Date:  2009-06-01       Impact factor: 4.562

9.  UP-TORR: online tool for accurate and Up-to-Date annotation of RNAi Reagents.

Authors:  Yanhui Hu; Charles Roesel; Ian Flockhart; Lizabeth Perkins; Norbert Perrimon; Stephanie E Mohr
Journal:  Genetics       Date:  2013-06-21       Impact factor: 4.562

10.  Somatic insulin signaling regulates a germline starvation response in Drosophila egg chambers.

Authors:  K Mahala Burn; Yuko Shimada; Kathleen Ayers; Soumya Vemuganti; Feiyue Lu; Andrew M Hudson; Lynn Cooley
Journal:  Dev Biol       Date:  2014-12-03       Impact factor: 3.582

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