Literature DB >> 18065451

Protein diffusion on charged membranes: a dynamic mean-field model describes time evolution and lipid reorganization.

George Khelashvili1, Harel Weinstein, Daniel Harries.   

Abstract

As charged macromolecules adsorb and diffuse on cell membranes in a large variety of cell signaling processes, they can attract or repel oppositely charged lipids. This results in lateral membrane rearrangement and affects the dynamics of protein function. To address such processes quantitatively we introduce a dynamic mean-field scheme that allows self-consistent calculations of the equilibrium state of membrane-protein complexes after such lateral reorganization of the membrane components, and serves to probe kinetic details of the process. Applicable to membranes with heterogeneous compositions containing several types of lipids, this comprehensive method accounts for mobile salt ions and charged macromolecules in three dimensions, as well as for lateral demixing of charged and net-neutral lipids in the membrane plane. In our model, the mobility of membrane components is governed by the diffusion-like Cahn-Hilliard equation, while the local electrochemical potential is based on nonlinear Poisson-Boltzmann theory. We illustrate the method by applying it to the adsorption of the anionic polypeptide poly-Lysine on negatively charged lipid membranes composed of binary mixtures of neutral and monovalent lipids, or onto ternary mixtures of neutral, monovalent, and multivalent lipids. Consistent with previous calculations and experiments, our results show that at steady-state multivalent lipids (such as PIP(2)), but not monovalent lipid (such as phosphatidylserine), will segregate near the adsorbing macromolecules. To address the corresponding diffusion of the adsorbing protein in the membrane plane, we couple lipid mobility with the propagation of the adsorbing protein through a dynamic Monte Carlo scheme. We find that due to their higher mobility dictated by the electrochemical potential, multivalent lipids such as PIP(2) more quickly segregate near oppositely charged proteins than do monovalent lipids, even though their diffusion constants may be similar. The segregation, in turn, slows protein diffusion, as lipids introduce an effective drag on the motion of the adsorbate. In contrast, monovalent lipids such as phosphatidylserine only weakly segregate, and the diffusions of protein and lipid remain largely uncorrelated.

Entities:  

Mesh:

Substances:

Year:  2007        PMID: 18065451      PMCID: PMC2267151          DOI: 10.1529/biophysj.107.120667

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  35 in total

1.  Osmotic stress, crowding, preferential hydration, and binding: A comparison of perspectives.

Authors:  V A Parsegian; R P Rand; D C Rau
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-11       Impact factor: 11.205

2.  Three-dimensional Poisson-Nernst-Planck theory studies: influence of membrane electrostatics on gramicidin A channel conductance.

Authors:  A E Cárdenas; R D Coalson; M G Kurnikova
Journal:  Biophys J       Date:  2000-07       Impact factor: 4.033

3.  Electrostatics of nanosystems: application to microtubules and the ribosome.

Authors:  N A Baker; D Sept; S Joseph; M J Holst; J A McCammon
Journal:  Proc Natl Acad Sci U S A       Date:  2001-08-21       Impact factor: 11.205

4.  Lipid demixing and protein-protein interactions in the adsorption of charged proteins on mixed membranes.

Authors:  S May; D Harries; A Ben-Shaul
Journal:  Biophys J       Date:  2000-10       Impact factor: 4.033

5.  Macroion-induced compositional instability of binary fluid membranes.

Authors:  Sylvio May; Daniel Harries; Avinoam Ben-Shaul
Journal:  Phys Rev Lett       Date:  2002-12-09       Impact factor: 9.161

Review 6.  PIP(2) and proteins: interactions, organization, and information flow.

Authors:  Stuart McLaughlin; Jiyao Wang; Alok Gambhir; Diana Murray
Journal:  Annu Rev Biophys Biomol Struct       Date:  2001-10-25

7.  Structural basis of the membrane-targeting and unmasking mechanisms of the radixin FERM domain.

Authors:  K Hamada; T Shimizu; T Matsui; S Tsukita; T Hakoshima
Journal:  EMBO J       Date:  2000-09-01       Impact factor: 11.598

Review 8.  Signaling and subcellular targeting by membrane-binding domains.

Authors:  J H Hurley; S Misra
Journal:  Annu Rev Biophys Biomol Struct       Date:  2000

9.  Lateral sequestration of phosphatidylinositol 4,5-bisphosphate by the basic effector domain of myristoylated alanine-rich C kinase substrate is due to nonspecific electrostatic interactions.

Authors:  Jiyao Wang; Alok Gambhir; Gyöngyi Hangyás-Mihályné; Diana Murray; Urszula Golebiewska; Stuart McLaughlin
Journal:  J Biol Chem       Date:  2002-07-03       Impact factor: 5.157

10.  Phospholipids undergo hop diffusion in compartmentalized cell membrane.

Authors:  Takahiro Fujiwara; Ken Ritchie; Hideji Murakoshi; Ken Jacobson; Akihiro Kusumi
Journal:  J Cell Biol       Date:  2002-06-10       Impact factor: 10.539

View more
  19 in total

Review 1.  Functional mechanisms of neurotransmitter transporters regulated by lipid-protein interactions of their terminal loops.

Authors:  George Khelashvili; Harel Weinstein
Journal:  Biochim Biophys Acta       Date:  2015-04-04

2.  A comparison of coarse-grained and continuum models for membrane bending in lipid bilayer fusion pores.

Authors:  Jejoong Yoo; Meyer B Jackson; Qiang Cui
Journal:  Biophys J       Date:  2013-02-19       Impact factor: 4.033

3.  Compositional redistribution and dynamic heterogeneity in mixed lipid membrane induced by polyelectrolyte adsorption: effects of chain rigidity.

Authors:  Xiaozheng Duan; Yunqi Li; Ran Zhang; Tongfei Shi; Lijia An; Qingrong Huang
Journal:  Eur Phys J E Soft Matter       Date:  2014-08-22       Impact factor: 1.890

4.  Calculating Transition Energy Barriers and Characterizing Activation States for Steps of Fusion.

Authors:  Rolf J Ryham; Thomas S Klotz; Lihan Yao; Fredric S Cohen
Journal:  Biophys J       Date:  2016-03-08       Impact factor: 4.033

5.  Accelerating membrane insertion of peripheral proteins with a novel membrane mimetic model.

Authors:  Y Zenmei Ohkubo; Taras V Pogorelov; Mark J Arcario; Geoff A Christensen; Emad Tajkhorshid
Journal:  Biophys J       Date:  2012-05-02       Impact factor: 4.033

6.  Lateral dynamics of proteins with polybasic domain on anionic membranes: a dynamic Monte-Carlo study.

Authors:  Vladimir Yu Kiselev; Davide Marenduzzo; Andrew B Goryachev
Journal:  Biophys J       Date:  2011-03-02       Impact factor: 4.033

7.  Computational modeling of the N-terminus of the human dopamine transporter and its interaction with PIP2 -containing membranes.

Authors:  George Khelashvili; Milka Doktorova; Michelle A Sahai; Niklaus Johner; Lei Shi; Harel Weinstein
Journal:  Proteins       Date:  2015-03-25

8.  Towards a quantitative representation of the cell signaling mechanisms of hallucinogens: measurement and mathematical modeling of 5-HT1A and 5-HT2A receptor-mediated ERK1/2 activation.

Authors:  Chiung-Wen Chang; Ethan Poteet; John A Schetz; Zeynep H Gümüş; Harel Weinstein
Journal:  Neuropharmacology       Date:  2008-08-13       Impact factor: 5.250

9.  Modeling membrane deformations and lipid demixing upon protein-membrane interaction: the BAR dimer adsorption.

Authors:  George Khelashvili; Daniel Harries; Harel Weinstein
Journal:  Biophys J       Date:  2009-09-16       Impact factor: 4.033

10.  The "electrostatic-switch" mechanism: Monte Carlo study of MARCKS-membrane interaction.

Authors:  Shelly Tzlil; Diana Murray; Avinoam Ben-Shaul
Journal:  Biophys J       Date:  2008-05-23       Impact factor: 4.033

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.