Literature DB >> 21354399

Lateral dynamics of proteins with polybasic domain on anionic membranes: a dynamic Monte-Carlo study.

Vladimir Yu Kiselev1, Davide Marenduzzo, Andrew B Goryachev.   

Abstract

Positively charged polybasic domains are essential for recruiting multiple signaling proteins, such as Ras GTPases and Src kinase, to the negatively charged cellular membranes. Much less, however, is known about the influence of electrostatic interactions on the lateral dynamics of these proteins. We developed a dynamic Monte-Carlo automaton that faithfully simulates lateral diffusion of the adsorbed positively charged oligopeptides as well as the dynamics of mono- (phosphatidylserine) and polyvalent (PIP(2)) anionic lipids within the bilayer. In agreement with earlier results, our simulations reveal lipid demixing that leads to the formation of a lipid shell associated with the peptide. The computed association times and average numbers of bound lipids demonstrate that tetravalent PIP(2) interacts with the peptide much more strongly than monovalent lipid. On the spatially homogeneous membrane, the lipid shell affects the behavior of the peptide only by weakly reducing its lateral mobility. However, spatially heterogeneous distributions of monovalent lipids are found to produce peptide drift, the velocity of which is determined by the total charge of the peptide-lipid complex. We hypothesize that this predicted phenomenon may affect the spatial distribution of proteins with polybasic domains in the context of cell-signaling events that alter the local density of monovalent anionic lipids.
Copyright © 2011 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21354399      PMCID: PMC3043203          DOI: 10.1016/j.bpj.2011.01.025

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  62 in total

1.  Computer simulations of protein diffusion in compartmentalized cell membranes.

Authors:  Bong June Sung; Arun Yethiraj
Journal:  Biophys J       Date:  2009-07-22       Impact factor: 4.033

Review 2.  Theoretical analysis of protein organization in lipid membranes.

Authors:  T Gil; J H Ipsen; O G Mouritsen; M C Sabra; M M Sperotto; M J Zuckermann
Journal:  Biochim Biophys Acta       Date:  1998-11-10

3.  Binding of peripheral proteins to mixed lipid membranes: effect of lipid demixing upon binding.

Authors:  T Heimburg; B Angerstein; D Marsh
Journal:  Biophys J       Date:  1999-05       Impact factor: 4.033

4.  Pivotal Advance: Phospholipids determine net membrane surface charge resulting in differential localization of active Rac1 and Rac2.

Authors:  Marco A O Magalhaes; Michael Glogauer
Journal:  J Leukoc Biol       Date:  2010-04       Impact factor: 4.962

5.  Binding of small basic peptides to membranes containing acidic lipids: theoretical models and experimental results.

Authors:  N Ben-Tal; B Honig; R M Peitzsch; G Denisov; S McLaughlin
Journal:  Biophys J       Date:  1996-08       Impact factor: 4.033

6.  Unrestricted diffusion of exogenous and endogenous PIP(2 )in baby hamster kidney and Chinese hamster ovary cell plasmalemma.

Authors:  Alp Yaradanakul; Donald W Hilgemann
Journal:  J Membr Biol       Date:  2007-11-16       Impact factor: 1.843

7.  Reversible immobilization of diffusive membrane-associated proteins using a liquid-gel bilayer phase transition: a case study of Annexin V monomers.

Authors:  Jason J Han; Doo Wan Boo
Journal:  Langmuir       Date:  2009-03-03       Impact factor: 3.882

8.  The fluid mosaic model of the structure of cell membranes.

Authors:  S J Singer; G L Nicolson
Journal:  Science       Date:  1972-02-18       Impact factor: 47.728

9.  AN EMPIRICAL FORMULA FOR THE RELATION BETWEEN VISCOSITY OF SOLUTION AND VOLUME OF SOLUTE.

Authors:  M Kunitz
Journal:  J Gen Physiol       Date:  1926-07-20       Impact factor: 4.086

10.  Src kinase activity and SH2 domain regulate the dynamics of Src association with lipid and protein targets.

Authors:  Dmitry E Shvartsman; John C Donaldson; Begoña Diaz; Orit Gutman; G Steven Martin; Yoav I Henis
Journal:  J Cell Biol       Date:  2007-08-13       Impact factor: 10.539

View more
  9 in total

1.  Compositional redistribution and dynamic heterogeneity in mixed lipid membrane induced by polyelectrolyte adsorption: effects of chain rigidity.

Authors:  Xiaozheng Duan; Yunqi Li; Ran Zhang; Tongfei Shi; Lijia An; Qingrong Huang
Journal:  Eur Phys J E Soft Matter       Date:  2014-08-22       Impact factor: 1.890

2.  Dual regulation of diacylglycerol kinase (DGK)-θ: polybasic proteins promote activation by phospholipids and increase substrate affinity.

Authors:  Becky Tu-Sekine; Daniel M Raben
Journal:  J Biol Chem       Date:  2012-10-22       Impact factor: 5.157

3.  Signal integration by lipid-mediated spatial cross talk between Ras nanoclusters.

Authors:  Yong Zhou; Hong Liang; Travis Rodkey; Nicholas Ariotti; Robert G Parton; John F Hancock
Journal:  Mol Cell Biol       Date:  2013-12-23       Impact factor: 4.272

4.  Effect of polyelectrolyte adsorption on lateral distribution and dynamics of anionic lipids: a Monte Carlo study of a coarse-grain model.

Authors:  Xiaozheng Duan; Ran Zhang; Yunqi Li; Yongbiao Yang; Tongfei Shi; Lijia An; Qingrong Huang
Journal:  Eur Biophys J       Date:  2014-06-28       Impact factor: 1.733

5.  The initiation of post-synaptic protrusions.

Authors:  Pirta Hotulainen; Juha Saarikangas
Journal:  Commun Integr Biol       Date:  2016-04-12

6.  Cell patterning by secretion-induced plasma membrane flows.

Authors:  Veneta Gerganova; Iker Lamas; David M Rutkowski; Aleksandar Vještica; Daniela Gallo Castro; Vincent Vincenzetti; Dimitrios Vavylonis; Sophie G Martin
Journal:  Sci Adv       Date:  2021-09-17       Impact factor: 14.136

7.  Quantifying disorder through conditional entropy: an application to fluid mixing.

Authors:  Giovanni B Brandani; Marieke Schor; Cait E Macphee; Helmut Grubmüller; Ulrich Zachariae; Davide Marenduzzo
Journal:  PLoS One       Date:  2013-06-10       Impact factor: 3.240

Review 8.  The Implications for Cells of the Lipid Switches Driven by Protein-Membrane Interactions and the Development of Membrane Lipid Therapy.

Authors:  Manuel Torres; Catalina Ana Rosselló; Paula Fernández-García; Victoria Lladó; Or Kakhlon; Pablo Vicente Escribá
Journal:  Int J Mol Sci       Date:  2020-03-27       Impact factor: 5.923

Review 9.  Every Detail Matters. That Is, How the Interaction between Gα Proteins and Membrane Affects Their Function.

Authors:  Agnieszka Polit; Paweł Mystek; Ewa Błasiak
Journal:  Membranes (Basel)       Date:  2021-03-20
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.