Literature DB >> 18048321

Mechanoenzymes under superstall and large assisting loads reveal structural features.

Denis Tsygankov1, Michael E Fisher.   

Abstract

Single-molecule experiments on the motor protein kinesin have observed runs of backsteps and thus a negative, that is, reverse mean velocity, V, under superstall loads, F; but, counterintuitively, beyond stall, V(F) displays a shallow minimum and then decreases in magnitude. Conversely, under assisting loads V(F) rises to a maximum before decreasing monotonically. By contrast, while the velocity of myosin V also saturates under assisting loads, the motor moves backward increasingly rapidly under superstall loads. For both kinesin and myosin V this behavior is implied remarkably well by simple two-state kinetic models when extrapolated to large loads. To understand the origins of such results in general mechanoenzymes, biochemical kinetic descriptions are discussed on the basis of a free-energy landscape picture. It transpires that the large-load performance is determined by the geometrical placement of the intermediate mechanochemical states of the enzymatic cycles relative to the associated transition states. Explicit criteria are presented for N-state sequential kinetics, including side-reaction chains, etc., and for parallel-pathway models. Physical colocalization of biochemically distinct states generally implies large-load velocity saturation.

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Year:  2007        PMID: 18048321      PMCID: PMC2148288          DOI: 10.1073/pnas.0709911104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  17 in total

1.  Simple mechanochemistry describes the dynamics of kinesin molecules.

Authors:  M E Fisher; A B Kolomeisky
Journal:  Proc Natl Acad Sci U S A       Date:  2001-06-26       Impact factor: 11.205

2.  An automated two-dimensional optical force clamp for single molecule studies.

Authors:  Matthew J Lang; Charles L Asbury; Joshua W Shaevitz; Steven M Block
Journal:  Biophys J       Date:  2002-07       Impact factor: 4.033

3.  Kinesin crouches to sprint but resists pushing.

Authors:  Michael E Fisher; Young C Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-17       Impact factor: 11.205

4.  From continuum Fokker-Planck models to discrete kinetic models.

Authors:  Jianhua Xing; Hongyun Wang; George Oster
Journal:  Biophys J       Date:  2005-07-01       Impact factor: 4.033

5.  Force and velocity measured for single molecules of RNA polymerase.

Authors:  M D Wang; M J Schnitzer; H Yin; R Landick; J Gelles; S M Block
Journal:  Science       Date:  1998-10-30       Impact factor: 47.728

6.  Vectorial loading of processive motor proteins: implementing a landscape picture.

Authors:  Young C Kim; Michael E Fisher
Journal:  J Phys Condens Matter       Date:  2005-11-04       Impact factor: 2.333

7.  Myosin-V is a mechanical ratchet.

Authors:  J Christof M Gebhardt; Anabel E-M Clemen; Johann Jaud; Matthias Rief
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-26       Impact factor: 11.205

Review 8.  Molecular motors: a theorist's perspective.

Authors:  Anatoly B Kolomeisky; Michael E Fisher
Journal:  Annu Rev Phys Chem       Date:  2007       Impact factor: 12.703

9.  A simple kinetic model describes the processivity of myosin-v.

Authors:  Anatoly B Kolomeisky; Michael E Fisher
Journal:  Biophys J       Date:  2003-03       Impact factor: 4.033

10.  Mechanochemical coupling of two substeps in a single myosin V motor.

Authors:  Sotaro Uemura; Hideo Higuchi; Adrian O Olivares; Enrique M De La Cruz; Shin'ichi Ishiwata
Journal:  Nat Struct Mol Biol       Date:  2004-08-01       Impact factor: 15.369

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  10 in total

1.  Unconventional processive mechanics of non-muscle myosin IIB.

Authors:  Melanie F Norstrom; Philip A Smithback; Ronald S Rock
Journal:  J Biol Chem       Date:  2010-05-29       Impact factor: 5.157

2.  Chemomechanical coupling and motor cycles of myosin V.

Authors:  Veronika Bierbaum; Reinhard Lipowsky
Journal:  Biophys J       Date:  2011-04-06       Impact factor: 4.033

3.  Ensemble velocity of non-processive molecular motors with multiple chemical states.

Authors:  Andrej Vilfan
Journal:  Interface Focus       Date:  2014-12-06       Impact factor: 3.906

4.  A Unified Walking Model for Dimeric Motor Proteins.

Authors:  Kazuo Sasaki; Motoshi Kaya; Hideo Higuchi
Journal:  Biophys J       Date:  2018-10-16       Impact factor: 4.033

5.  A Perspective on the Role of Myosins as Mechanosensors.

Authors:  Michael J Greenberg; Göker Arpağ; Erkan Tüzel; E Michael Ostap
Journal:  Biophys J       Date:  2016-06-21       Impact factor: 4.033

6.  Beyond microscopic reversibility: Are observable non-equilibrium processes precisely reversible?

Authors:  Divesh Bhatt; Daniel M Zuckerman
Journal:  J Chem Theory Comput       Date:  2011-08-09       Impact factor: 6.006

7.  Myosin I can act as a molecular force sensor.

Authors:  Joseph M Laakso; John H Lewis; Henry Shuman; E Michael Ostap
Journal:  Science       Date:  2008-07-04       Impact factor: 47.728

8.  Design principles governing the motility of myosin V.

Authors:  Michael Hinczewski; Riina Tehver; D Thirumalai
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-07       Impact factor: 11.205

9.  Phenomenological analysis of ATP dependence of motor proteins.

Authors:  Yunxin Zhang
Journal:  PLoS One       Date:  2012-03-23       Impact factor: 3.240

10.  Chemomechanical regulation of myosin Ic cross-bridges: Deducing the elastic properties of an ensemble from single-molecule mechanisms.

Authors:  Florian Berger; A J Hudspeth
Journal:  PLoS Comput Biol       Date:  2017-05-26       Impact factor: 4.475

  10 in total

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