Literature DB >> 11427717

Simple mechanochemistry describes the dynamics of kinesin molecules.

M E Fisher1, A B Kolomeisky.   

Abstract

Recently, Block and coworkers [Visscher, K., Schnitzer, M. J., &amp; Block, S. M. (1999) Nature (London) 400, 184--189 and Schnitzer, M. J., Visscher, K. &amp; Block, S. M. (2000) Nat. Cell Biol. 2, 718--723] have reported extensive observations of individual kinesin molecules moving along microtubules in vitro under controlled loads, F = 1 to 8 pN, with [ATP] = 1 microM to 2 mM. Their measurements of velocity, V, randomness, r, stalling force, and mean run length, L, reveal a need for improved theoretical understanding. We show, presenting explicit formulae that provide a quantitative basis for comparing distinct molecular motors, that their data are satisfactorily described by simple, discrete-state, sequential stochastic models. The simplest (N = 2)-state model with fixed load-distribution factors and kinetic rate constants concordant with stopped-flow experiments, accounts for the global (V, F, L, [ATP]) interdependence and, further, matches relative acceleration observed under assisting loads. The randomness, r(F,[ATP]), is accounted for by a waiting-time distribution, psi(1)(+)(t), [for the transition(s) following ATP binding] with a width parameter nu identical with <t>(2)/<(Delta t)(2)> approximately 2.5, indicative of a dispersive stroke of mechanicity approximately 0.6 or of a few ( greater than or similar to nu - 1) further, kinetically coupled states: indeed, N = 4 (but not N = 3) models do well. The analysis reveals: (i) a substep of d(0) = 1.8--2.1 nm on ATP binding (consistent with structurally based suggestions); (ii) comparable load dependence for ATP binding and unbinding; (iii) a strong load dependence for reverse hydrolysis and subsequent reverse rates; and (iv) a large ( greater than or similar to 50-fold) increase in detachment rate, with a marked load dependence, following ATP binding.

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Year:  2001        PMID: 11427717      PMCID: PMC35413          DOI: 10.1073/pnas.141080498

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  11 in total

1.  Single kinesin molecules studied with a molecular force clamp.

Authors:  K Visscher; M J Schnitzer; S M Block
Journal:  Nature       Date:  1999-07-08       Impact factor: 49.962

Review 2.  The conformational cycle of kinesin.

Authors:  R A Cross; I Crevel; N J Carter; M C Alonso; K Hirose; L A Amos
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2000-04-29       Impact factor: 6.237

3.  A structural change in the kinesin motor protein that drives motility.

Authors:  S Rice; A W Lin; D Safer; C L Hart; N Naber; B O Carragher; S M Cain; E Pechatnikova; E M Wilson-Kubalek; M Whittaker; E Pate; R Cooke; E W Taylor; R A Milligan; R D Vale
Journal:  Nature       Date:  1999-12-16       Impact factor: 49.962

4.  Force production by single kinesin motors.

Authors:  M J Schnitzer; K Visscher; S M Block
Journal:  Nat Cell Biol       Date:  2000-10       Impact factor: 28.824

5.  The force exerted by a molecular motor.

Authors:  M E Fisher; A B Kolomeisky
Journal:  Proc Natl Acad Sci U S A       Date:  1999-06-08       Impact factor: 11.205

Review 6.  The design plan of kinesin motors.

Authors:  R D Vale; R J Fletterick
Journal:  Annu Rev Cell Dev Biol       Date:  1997       Impact factor: 13.827

7.  Mechanics of single kinesin molecules measured by optical trapping nanometry.

Authors:  H Kojima; E Muto; H Higuchi; T Yanagida
Journal:  Biophys J       Date:  1997-10       Impact factor: 4.033

8.  The force generated by a single kinesin molecule against an elastic load.

Authors:  E Meyhöfer; J Howard
Journal:  Proc Natl Acad Sci U S A       Date:  1995-01-17       Impact factor: 11.205

9.  Fluctuation analysis of motor protein movement and single enzyme kinetics.

Authors:  K Svoboda; P P Mitra; S M Block
Journal:  Proc Natl Acad Sci U S A       Date:  1994-12-06       Impact factor: 11.205

10.  Pathway of ATP hydrolysis by monomeric and dimeric kinesin.

Authors:  M L Moyer; S P Gilbert; K A Johnson
Journal:  Biochemistry       Date:  1998-01-20       Impact factor: 3.162

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  54 in total

1.  Bidirectional cooperative motion of molecular motors.

Authors:  M Badoual; F Jülicher; J Prost
Journal:  Proc Natl Acad Sci U S A       Date:  2002-05-14       Impact factor: 11.205

2.  Probing the kinesin reaction cycle with a 2D optical force clamp.

Authors:  Steven M Block; Charles L Asbury; Joshua W Shaevitz; Matthew J Lang
Journal:  Proc Natl Acad Sci U S A       Date:  2003-02-18       Impact factor: 11.205

3.  Fluctuations and randomness of movement of the bead powered by a single kinesin molecule in a force-clamped motility assay: Monte Carlo simulations.

Authors:  Yi-der Chen; Bo Yan; Robert J Rubin
Journal:  Biophys J       Date:  2002-11       Impact factor: 4.033

Review 4.  Kinesin: a molecular motor with a spring in its step.

Authors:  Neil Thomas; Yasuhiro Imafuku; Tsutomu Kamiya; Katsuhisa Tawada
Journal:  Proc Biol Sci       Date:  2002-11-22       Impact factor: 5.349

5.  Mechanistic constraints from the substrate concentration dependence of enzymatic fluctuations.

Authors:  Jeffrey R Moffitt; Yann R Chemla; Carlos Bustamante
Journal:  Proc Natl Acad Sci U S A       Date:  2010-08-20       Impact factor: 11.205

6.  Mechanochemistry in Translation.

Authors:  Sarah E Leininger; Karthik Narayan; Carol Deutsch; Edward P O'Brien
Journal:  Biochemistry       Date:  2019-06-11       Impact factor: 3.162

7.  External mechanical force as an inhibition process in kinesin's motion.

Authors:  Aleix Ciudad; José María Sancho
Journal:  Biochem J       Date:  2005-08-15       Impact factor: 3.857

8.  Kinesin crouches to sprint but resists pushing.

Authors:  Michael E Fisher; Young C Kim
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-17       Impact factor: 11.205

9.  From continuum Fokker-Planck models to discrete kinetic models.

Authors:  Jianhua Xing; Hongyun Wang; George Oster
Journal:  Biophys J       Date:  2005-07-01       Impact factor: 4.033

10.  Statistical kinetics of macromolecular dynamics.

Authors:  Joshua W Shaevitz; Steven M Block; Mark J Schnitzer
Journal:  Biophys J       Date:  2005-07-22       Impact factor: 4.033

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